In essential metabolic tasks: NEFA blood pool in[x] should be changed for NEFA blood pool in[s]

[CadavidJoseL]

Essential task 46 (Uptake and beta oxidation of all NEFAs) fails in version 1.9. NEFA blood pool in[x] should be changed for NEFA blood pool in[s]; this solves the issue.

[JonathanRob]

@CadavidJoseL Thanks for finding this, it should be changed to the [s] compartment as you suggest.

However, this task should not fail, even with the [x] compartment being used. Did you remember to add the boundary metabolites before running checkTasks?:

model_boundary = addBoundaryMets(model);
checkTasks(model_boundary, ...);

If the boundary metabolites are not present, then the task check results will not be valid.

[CadavidJoseL]

You're right, I did forget to add those boundary mets; that also fixes the issue. Thanks!

[JonathanRob]

No problem, but I believe you are still correct in that the NEFA blood pool in compartment should be changed from [x] to [s] in the task file.

[JonathanRob]

If it's ok with you, @CadavidJoseL, I'd like to keep this issue open until we correct the compartment of the NEFA blood pool in in the task file. Otherwise we may forget to make the fix.

[JonathanRob]

This issue was resolved in #331.