TENET(Transfer Entropy-based causal gene NETwork) refined
Please visit the orignal TENET Github. Also take a look at the original TENET Paper.
- refined and packaged as python3 module for improved usability
- explicit parallelization by python multiprocessing, does not depend on openmpi
- utilizes shared memory to avoid overhead from collecting results from threads
- core java code remains unchanged to guarentee same results
- Python >= 3.10
- JPype >= 1.4.0
- numpy
- pandas
- tqdm
This module is not on pypi.
git clone --recurse-submodules https://github.com/Stfort52/NOLAN.git
Please refer to the repository wiki.