Skip to content
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
41 changes: 41 additions & 0 deletions method/RESEPT/environment.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,41 @@
name: RESEPT
channels:
- conda-forge
- pytorch
- defaults
dependencies:
# Python 3.6+ recommended in RESEPT docs
- python=3.8.*
- pip=23.*
- pytorch==1.5.1
- torchvision==0.6.1
- pip:
- anndata==0.7.6
- cityscapesscripts==2.2.0
- leidenalg==0.8.7
- matplotlib==3.3.4
# to make use of GPUs, "cpu" in the URL below should be replaced with one of
# "cu92", "cu101" or "cu102", depending on the CUDA version
- mmcv-full==1.3.0 -f https://download.openmmlab.com/mmcv/dist/cpu/torch1.5.0/index.html
- munkres==1.1.4
- networkx==2.5.1
- numba==0.53.1
- numpy==1.19.2
- opencv_contrib_python==4.5.1.48
- pandas==1.2.3
- pillow==8.3.1
- progress==1.6
- python_igraph==0.9.6
- requests==2.25.1
- rpy2==3.1.0
- scanpy==1.7.2
- scikit_image==0.18.1
- scikit-learn==0.24.2
- scipy==1.6.2
- seaborn==0.11.1
- six==1.15.0
- statsmodels==0.12.2
- terminaltables==3.1.0
- tqdm==4.60.0
- umap==0.1.1
- umap_learn==0.5.1