Genome properties

recipes/genome-properties/build.sh

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+#!/bin/bash
+
+set -e -o pipefail
+
+cpanm DDP
+cpanm LWP::UserAgent
+
+
+
+outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $outdir
+mkdir -p $PREFIX/bin
+
+cp -r flatfiles $outdir
+cp -r code $outdir
+
+
+# make assign_genome_properties.pl available
+ln -s $outdir/code/scripts/assign_genome_properties.pl $PREFIX/bin
+
+mkdir -p ${PREFIX}/etc/conda/activate.d/
+echo "export export PERL5LIB=$PERL5LIB:$outdir/code/modules" > ${PREFIX}/etc/conda/activate.d/${PKG_NAME}-${PKG_VERSION}.sh

recipes/genome-properties/meta.yaml

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+{% set version = "2.0.1" %}
+
+package:
+  name: genome-properties
+  version: {{ version }}
+
+source:
+  url: https://github.com/SilasK/genome-properties/archive/v{{ version }}.tar.gz
+  sha256: 628428e7ed2b74c16703fcf8e825e84d4cbcbadf4dc61dac6c64e89f35694ecc
+build:
+  number: 1
+
+requirements:
+  host:
+    - perl=5.22.0.1
+    - perl-app-cpanminus=1.7043
+    - perl-clone=0.38
+    - perl-json=2.90
+    - perl-try-tiny=0.24
+  run:
+    - perl=5.22.0.1
+    - perl-app-cpanminus=1.7043
+    - perl-clone=0.38
+    - perl-json=2.90
+    - perl-try-tiny=0.24
+
+test:
+  commands:
+    - assign_genome_properties.pl -h
+
+about:
+  home: https://www.ebi.ac.uk/interpro/genomeproperties/
+  license: GPLv3
+  license_family: GPL
+  summary: |
+    Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome. Properties (which often describe pathways) are composed of steps, with each step defining a protein required for the function of the pathway/property. Genome properties use protein signatures as evidence to determine the presence of each step within a property.
+  dev_url: https://github.com/ebi-pf-team/genome-properties
+  doc_url: https://genome-properties.readthedocs.io/en/latest/index.html
+extra:
+  recipe-maintainers:
+    - kiesers
+  identifiers:
+    - doi:10.1093/nar/gky1013