remove the dependancy on setup.cfg and setup.py (#177)

* removed flake8

* removed metadata

* added dynamics

* removed options

* moved pytest options

* removed coverage mentions

* removed coverage mentions

* simplified tephi pytest

* muted error handling

* readded cov mentions

* added review review ignore

* removed package options section

* added scm (stackoverflow suggestion)

* deleted setup.cfg

* deleted manifest

* deleted setup.py (manifest is fine, typo)

* isolated build again...

* removed iso-build, readded setup.py

* rejigged order of pyproject.toml

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* added @bjlittle suggestions from prev pr

* up to date with #173

* added testing matrix

* corrected tox call

* added space to pyproj.toml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.github/workflows/ci-tests.yml

@@ -13,9 +13,20 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-  build:
+  tests:
+    name: "${{ matrix.session }} (${{ matrix.version }})"
 
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.os }}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ "ubuntu-latest" ]
+        version: [ "py38", "py39", "py310", "py311"]
+        session: [ "test" ]
+        include:
+          - version: "py311"
+            coverage: "--cov-report= --cov=tephi"
 
     steps:
     - uses: actions/checkout@v3
@@ -27,4 +38,6 @@ jobs:
           .tox
 
     - name: Run tox
-      run: pipx run 'tox<4'
+      run: |
+        pip install 'tox<4'
+        tox -e ${{ matrix.version }}-${{ matrix.session }}

MANIFEST.in

@@ -15,3 +15,6 @@ recursive-include docs *.png
 recursive-include docs *.py
 recursive-include docs *.rst
 recursive-include docs Makefile
+recursive-include tephi *.json
+recursive-include tephi *.npz
+recursive-include tephi *.txt

pyproject.toml

@@ -1,10 +1,11 @@
 # See https://github.com/SciTools/.github/wiki/Linting
 # for SciTools linting guidelines
 
-[tool.black]
-line-length = 79
-target-version = ["py37", "py38", "py39", "py310"]
-include = '\.pyi?$'
+[build-system]
+# Defined by PEP 518
+requires = ["setuptools>=60"]
+# Defined by PEP 517
+build-backend = "setuptools.build_meta"
 
 [project]
 authors = [
@@ -26,8 +27,6 @@ classifiers = [
 ]
 description = "Tephigram plotting in Python"
 dynamic = [
-    "dependencies",
-    "optional-dependencies",
     "readme",
     "version",
 ]
@@ -40,53 +39,26 @@ keywords = [
 license = {text = "BSD-3-Clause"}
 name = "tephi"
 requires-python = ">=3.8"
+dependencies = ["matplotlib", "numpy", "scipy"]
 
 [project.urls]
 Code = "https://github.com/SciTools/tephi"
-Issues = "issues = https://github.com/SciTools/tephi/issues"
+Issues = "https://github.com/SciTools/tephi/issues"
 Binder= "https://mybinder.org/v2/gh/SciTools/tephi/main?filepath=index.ipynb"
 Docs =  "https://tephi.readthedocs.io/en/latest/"
 
-[build-system]
-# Defined by PEP 518
-requires = ["setuptools>=45"]
-# Defined by PEP 517
-build-backend = "setuptools.build_meta"
-
-[tool.repo-review]
-# These are a list of the currently failing tests:
-ignore = [
-    # https://learn.scientific-python.org/development/guides/style/#PC180
-    "PC180",  # Uses prettier
-
-    # https://learn.scientific-python.org/development/guides/packaging-simple/#PY005
-    "PY005",  # Has tests folder
-
-    # TODO: exceptions that still need investigating are below. Might be fixable, or might become permanent (above):
-
-    # https://learn.scientific-python.org/development/guides/pytest/#PP301
-    "PP301", # Has pytest in pyproject
-
-    # https://learn.scientific-python.org/development/guides/gha-basic/#GH212
-    "GH212",  # Require GHA update grouping
-
-    # https://learn.scientific-python.org/development/guides/style/#PC170
-    "PC170",  # Uses PyGrep hooks (only needed if rST present)
-
-    # https://learn.scientific-python.org/development/guides/style/#PC901
-    "PC901",  # Custom pre-commit CI message
-]
-
+[tool.black]
+line-length = 79
+target-version = ["py38", "py39", "py310", "py311"]
+include = '\.pyi?$'
 
 [tool.mypy]
 strict = false
 ignore_missing_imports = true
 warn_unused_configs = true
 warn_unreachable = true
 enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
-exclude = [
-
-]
+exclude = []
 
 [tool.numpydoc_validation]
 checks = [
@@ -126,6 +98,50 @@ exclude = [
     '\.__repr__$',
 ]
 
+[tool.pytest.ini_options]
+minversion = "6.0"
+markers = ["graphical: mark a test as a graphical test"]
+addopts = ["-ra",
+           "-v",
+           "--cov-config=.coveragerc",
+           "--cov=tephi",
+           "--cov-report=term-missing",
+           "--doctest-modules",
+           "--showlocals",
+           "--strict-markers",
+           "--strict-config"
+    ]
+xfail_strict = true
+log_cli_level = "info"
+testpaths = [
+  "tephi/",
+]
+doctest_optionflags = "NORMALIZE_WHITESPACE ELLIPSIS NUMBER"
+
+[tool.repo-review]
+# These are a list of the currently failing tests:
+ignore = [
+    # https://learn.scientific-python.org/development/guides/style/#PC180
+    "PC180",  # Uses prettier
+
+    # https://learn.scientific-python.org/development/guides/packaging-simple/#PY005
+    "PY005",  # Has tests folder
+
+    # TODO: exceptions that still need investigating are below. Might be fixable, or might become permanent (above):
+
+    # https://learn.scientific-python.org/development/guides/pytest#PP309
+    "PP309", # has filterwarnings set
+
+    # https://learn.scientific-python.org/development/guides/gha-basic/#GH212
+    "GH212",  # Require GHA update grouping
+
+    # https://learn.scientific-python.org/development/guides/style/#PC170
+    "PC170",  # Uses PyGrep hooks (only needed if rST present)
+
+    # https://learn.scientific-python.org/development/guides/style/#PC901
+    "PC901",  # Custom pre-commit CI message
+]
+
 [tool.ruff]
 line-length = 88
 
@@ -176,6 +192,19 @@ known-first-party = ["tephi"]
     "ERA001", # Has commented out code
 ]
 
-
 [tool.ruff.lint.pydocstyle]
 convention = "numpy"
+
+[tool.setuptools.dynamic]
+version = { attr = "tephi.__version__"}
+readme = {file = ["README.md"], content-type = "text/markdown"}
+
+[tool.setuptools.package-data]
+tephi = [
+    "etc/test_data/*.txt",
+    "tests/results/*.npz",
+    "tests/results/imagerepo.json"
+]
+
+[tool.setuptools.packages.find]
+include = ["tephi*"]

tox.ini

@@ -1,11 +1,9 @@
 [tox]
 requires =
     tox-conda
-minversion = 3.15
-base_python = py311
-envlist=py{38,39,310,311}
+isolated_build = True
 
-[testenv]
+[testenv:py{38,39,310,311}-test]
 description = invoke pytest to run automated tests
 deps =
     pytest