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[FB] [PI-3585] Change default loading unit from "1" to "unknown" (correct branch) #3709

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Merged
pp-mo merged 9 commits into from
Jun 1, 2020
Merged

[FB] [PI-3585] Change default loading unit from "1" to "unknown" (correct branch) #3709

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58f2509
change default loading unit from "1" to "unknown"
stephenworsley May 15, 2020
63001bf
fix unit default code
stephenworsley May 15, 2020
0a21653
update results to account for new default unit loading
stephenworsley May 15, 2020
17ea646
update results to account for new default unit loading
stephenworsley May 15, 2020
b30b0c6
address review comments
stephenworsley Jun 1, 2020
b0f23a5
fix tests
stephenworsley Jun 1, 2020
e568742
fix tests
stephenworsley Jun 1, 2020
c0190d4
address review comments
stephenworsley Jun 1, 2020
c051bb1
address review comments
stephenworsley Jun 1, 2020
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1 change: 1 addition & 0 deletions ...atsnew/contributions_3.0.0/incompatiblechange_2020-May-15_change_default_unit_loading.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
* When loading data from netcdf-CF files, where a variable has no "units" property, the corresponding Iris object will have "units='unknown'". Prior to Iris 3.0, these cases defaulted to "units='1'".
10 changes: 6 additions & 4 deletions lib/iris/fileformats/_pyke_rules/fc_rules_cf.krb
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Expand Up @@ -1195,6 +1195,8 @@ fc_extras
UD_UNITS_LON = ['degrees_east', 'degree_east', 'degree_e', 'degrees_e',
'degreee', 'degreese', 'degrees', 'degrees east',
'degree east', 'degree e', 'degrees e']
UNKNOWN_UNIT_STRING = "?"
NO_UNIT_STRING = "-"

#
# CF Dimensionless Vertical Coordinates
Expand Down Expand Up @@ -1651,9 +1653,9 @@ fc_extras

################################################################################
def get_attr_units(cf_var, attributes):
attr_units = getattr(cf_var, CF_ATTR_UNITS, cf_units._UNIT_DIMENSIONLESS)
attr_units = getattr(cf_var, CF_ATTR_UNITS, UNKNOWN_UNIT_STRING)
if not attr_units:
attr_units = '1'
attr_units = UNKNOWN_UNIT_STRING

# Sanitise lat/lon units.
if attr_units in UD_UNITS_LAT or attr_units in UD_UNITS_LON:
Expand All @@ -1668,10 +1670,10 @@ fc_extras
cf_var.cf_name, attr_units)
warnings.warn(msg)
attributes['invalid_units'] = attr_units
attr_units = cf_units._UNKNOWN_UNIT_STRING
attr_units = UNKNOWN_UNIT_STRING

if np.issubdtype(cf_var.dtype, np.str_):
attr_units = cf_units._NO_UNIT_STRING
attr_units = NO_UNIT_STRING

# Get any assoicated calendar for a time reference coordinate.
if cf_units.as_unit(attr_units).is_time_reference():
Expand Down
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/int64_auxiliary_coord_netcdf3.cml
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Expand Up @@ -6,7 +6,7 @@
</attributes>
<coords>
<coord datadims="[0]">
<auxCoord id="78a0dfe8" long_name="x" points="[1, 2]" shape="(2,)" units="Unit('1')" value_type="int32" var_name="x"/>
<auxCoord id="df8e91b1" long_name="x" points="[1, 2]" shape="(2,)" units="Unit('unknown')" value_type="int32" var_name="x"/>
</coord>
</coords>
<cellMethods/>
Expand Down
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/int64_dimension_coord_netcdf3.cml
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Expand Up @@ -6,7 +6,7 @@
</attributes>
<coords>
<coord datadims="[0]">
<dimCoord id="78a0dfe8" long_name="x" points="[1, 2]" shape="(2,)" units="Unit('1')" value_type="int32" var_name="x"/>
<dimCoord id="df8e91b1" long_name="x" points="[1, 2]" shape="(2,)" units="Unit('unknown')" value_type="int32" var_name="x"/>
</coord>
</coords>
<cellMethods/>
Expand Down
56 changes: 28 additions & 28 deletions lib/iris/tests/results/netcdf/netcdf_cell_methods.cml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
<?xml version="1.0" ?>
<cubes xmlns="urn:x-iris:cubeml-0.2">
<cube dtype="int32" long_name="cube_axes_0" units="1" var_name="cube_axes_0">
<cube dtype="int32" long_name="cube_axes_0" units="unknown" var_name="cube_axes_0">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -20,7 +20,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_axes_1" units="1" var_name="cube_axes_1">
<cube dtype="int32" long_name="cube_axes_1" units="unknown" var_name="cube_axes_1">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -41,7 +41,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_axes_2" units="1" var_name="cube_axes_2">
<cube dtype="int32" long_name="cube_axes_2" units="unknown" var_name="cube_axes_2">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -66,7 +66,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_axes_3" units="1" var_name="cube_axes_3">
<cube dtype="int32" long_name="cube_axes_3" units="unknown" var_name="cube_axes_3">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -89,7 +89,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_axes_4" units="1" var_name="cube_axes_4">
<cube dtype="int32" long_name="cube_axes_4" units="unknown" var_name="cube_axes_4">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -112,7 +112,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_comment_0" units="1" var_name="cube_comment_0">
<cube dtype="int32" long_name="cube_comment_0" units="unknown" var_name="cube_comment_0">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -131,7 +131,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_comment_1" units="1" var_name="cube_comment_1">
<cube dtype="int32" long_name="cube_comment_1" units="unknown" var_name="cube_comment_1">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -150,7 +150,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_comment_2" units="1" var_name="cube_comment_2">
<cube dtype="int32" long_name="cube_comment_2" units="unknown" var_name="cube_comment_2">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -170,7 +170,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_comment_3" units="1" var_name="cube_comment_3">
<cube dtype="int32" long_name="cube_comment_3" units="unknown" var_name="cube_comment_3">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -190,7 +190,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_comment_4" units="1" var_name="cube_comment_4">
<cube dtype="int32" long_name="cube_comment_4" units="unknown" var_name="cube_comment_4">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -213,7 +213,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_interval_0" units="1" var_name="cube_interval_0">
<cube dtype="int32" long_name="cube_interval_0" units="unknown" var_name="cube_interval_0">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -232,7 +232,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_interval_1" units="1" var_name="cube_interval_1">
<cube dtype="int32" long_name="cube_interval_1" units="unknown" var_name="cube_interval_1">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -252,7 +252,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_interval_2" units="1" var_name="cube_interval_2">
<cube dtype="int32" long_name="cube_interval_2" units="unknown" var_name="cube_interval_2">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -272,7 +272,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_interval_3" units="1" var_name="cube_interval_3">
<cube dtype="int32" long_name="cube_interval_3" units="unknown" var_name="cube_interval_3">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -295,7 +295,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_interval_4" units="1" var_name="cube_interval_4">
<cube dtype="int32" long_name="cube_interval_4" units="unknown" var_name="cube_interval_4">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -320,7 +320,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_maximum" units="1" var_name="cube_maximum">
<cube dtype="int32" long_name="cube_maximum" units="unknown" var_name="cube_maximum">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -333,7 +333,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_mean" units="1" var_name="cube_mean">
<cube dtype="int32" long_name="cube_mean" units="unknown" var_name="cube_mean">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -346,7 +346,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_median" units="1" var_name="cube_median">
<cube dtype="int32" long_name="cube_median" units="unknown" var_name="cube_median">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -359,7 +359,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_mid_range" units="1" var_name="cube_mid_range">
<cube dtype="int32" long_name="cube_mid_range" units="unknown" var_name="cube_mid_range">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -372,7 +372,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_minimum" units="1" var_name="cube_minimum">
<cube dtype="int32" long_name="cube_minimum" units="unknown" var_name="cube_minimum">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -385,7 +385,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_mix_0" units="1" var_name="cube_mix_0">
<cube dtype="int32" long_name="cube_mix_0" units="unknown" var_name="cube_mix_0">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -404,7 +404,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_mix_1" units="1" var_name="cube_mix_1">
<cube dtype="int32" long_name="cube_mix_1" units="unknown" var_name="cube_mix_1">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -424,7 +424,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_mix_2" units="1" var_name="cube_mix_2">
<cube dtype="int32" long_name="cube_mix_2" units="unknown" var_name="cube_mix_2">
<coords>
<coord datadims="[1]">
<dimCoord id="4a0cb9d8" points="[0, 1]" shape="(2,)" standard_name="latitude" units="Unit('degrees')" value_type="int32" var_name="lat"/>
Expand All @@ -447,7 +447,7 @@
</cellMethods>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="0xf626d399" shape="(1, 2, 2)"/>
</cube>
<cube dtype="int32" long_name="cube_mode" units="1" var_name="cube_mode">
<cube dtype="int32" long_name="cube_mode" units="unknown" var_name="cube_mode">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -460,7 +460,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_point" units="1" var_name="cube_point">
<cube dtype="int32" long_name="cube_point" units="unknown" var_name="cube_point">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -473,7 +473,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_standard_deviation" units="1" var_name="cube_standard_deviation">
<cube dtype="int32" long_name="cube_standard_deviation" units="unknown" var_name="cube_standard_deviation">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -486,7 +486,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_sum" units="1" var_name="cube_sum">
<cube dtype="int32" long_name="cube_sum" units="unknown" var_name="cube_sum">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -499,7 +499,7 @@
</cellMethods>
<data checksum="0x2144df1c" dtype="int32" mask_checksum="0xa505df1b" shape="(1,)"/>
</cube>
<cube dtype="int32" long_name="cube_variance" units="1" var_name="cube_variance">
<cube dtype="int32" long_name="cube_variance" units="unknown" var_name="cube_variance">
<coords>
<coord datadims="[0]">
<dimCoord id="3a4420ff" points="[0]" shape="(1,)" standard_name="time" units="Unit('hours since 1970-1-1 00:00:00', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand Down
8 changes: 4 additions & 4 deletions lib/iris/tests/results/netcdf/netcdf_global_xyzt_gems.cml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,11 +13,11 @@
<dimCoord circular="True" id="c15a8e5b" long_name="longitude" points="[0.0, 1.0, 2.0, ..., 357.0, 358.0, 359.0]" shape="(360,)" standard_name="longitude" units="Unit('degrees')" value_type="float32" var_name="longitude"/>
</coord>
<coord datadims="[1]">
<dimCoord id="93a9a76c" long_name="model_level_number" points="[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14,
<dimCoord id="4bb21cba" long_name="model_level_number" points="[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14,
15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,
27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
51, 52, 53, 54, 55, 56, 57, 58, 59, 60]" shape="(60,)" units="Unit('1')" value_type="int32" var_name="levelist"/>
51, 52, 53, 54, 55, 56, 57, 58, 59, 60]" shape="(60,)" units="Unit('unknown')" value_type="int32" var_name="levelist"/>
</coord>
<coord datadims="[0]">
<dimCoord id="90e644bf" long_name="time" points="[931344]" shape="(1,)" standard_name="time" units="Unit('hours since 1900-01-01 00:00:0.0', calendar='gregorian')" value_type="int32" var_name="time"/>
Expand All @@ -39,11 +39,11 @@
<dimCoord circular="True" id="c15a8e5b" long_name="longitude" points="[0.0, 1.0, 2.0, ..., 357.0, 358.0, 359.0]" shape="(360,)" standard_name="longitude" units="Unit('degrees')" value_type="float32" var_name="longitude"/>
</coord>
<coord datadims="[1]">
<dimCoord id="93a9a76c" long_name="model_level_number" points="[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14,
<dimCoord id="4bb21cba" long_name="model_level_number" points="[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14,
15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,
27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
51, 52, 53, 54, 55, 56, 57, 58, 59, 60]" shape="(60,)" units="Unit('1')" value_type="int32" var_name="levelist"/>
51, 52, 53, 54, 55, 56, 57, 58, 59, 60]" shape="(60,)" units="Unit('unknown')" value_type="int32" var_name="levelist"/>
</coord>
<coord datadims="[0]">
<dimCoord id="90e644bf" long_name="time" points="[931344]" shape="(1,)" standard_name="time" units="Unit('hours since 1900-01-01 00:00:0.0', calendar='gregorian')" value_type="int32" var_name="time"/>
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