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Merged
bjlittle merged 4 commits into from
Jun 1, 2018
Merged

Unpin netcdf4 #3031

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f0682b0
unpin netcdf4
ocefpaf May 29, 2018
0cbede9
adapt for netcdf4 >=1.4
ocefpaf May 29, 2018
f40adf6
fix userguide doctests
bjlittle Jun 1, 2018
a733621
Merge pull request #3 from bjlittle/fix-doctests
ocefpaf Jun 1, 2018
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12 changes: 7 additions & 5 deletions docs/iris/src/userguide/interpolation_and_regridding.rst
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Expand Up @@ -132,9 +132,10 @@ This cube has a "hybrid-height" vertical coordinate system, meaning that the ver
coordinate is unevenly spaced in altitude:

>>> print(column.coord('altitude').points)
[ 418.69836 434.5705 456.7928 485.3665 520.2933 561.5752
609.2145 663.2141 723.57697 790.30664 863.4072 942.8823
1028.737 1120.9764 1219.6051 ]
[418.6983642578125 434.57049560546875 456.79278564453125 485.3664855957031
520.2932739257812 561.5751953125 609.2144775390625 663.214111328125
723.5769653320312 790.306640625 863.4072265625 942.88232421875
1028.737060546875 1120.9764404296875 1219.6051025390625]

We could regularise the vertical coordinate by defining 10 equally spaced altitude
sample points between 400 and 1250 and interpolating our vertical coordinate onto
Expand Down Expand Up @@ -177,8 +178,9 @@ For example, to mask values that lie beyond the range of the original data:
>>> scheme = iris.analysis.Linear(extrapolation_mode='mask')
>>> new_column = column.interpolate(sample_points, scheme)
>>> print(new_column.coord('altitude').points)
[ nan 494.44452 588.8889 683.33325 777.77783 872.2222
966.66675 1061.1111 1155.5554 nan]
[nan 494.44451904296875 588.888916015625 683.333251953125 777.77783203125
872.2222290039062 966.666748046875 1061.111083984375 1155.555419921875
nan]


.. _caching_an_interpolator:
Expand Down
4 changes: 2 additions & 2 deletions ...ris/tests/results/integration/netcdf/TestSaveMultipleAuxFactories/hybrid_height_cubes.cml
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Expand Up @@ -62,7 +62,7 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x2acdccca" dtype="int64" shape="(3, 4, 5, 6)"/>
<data checksum="0x2acdccca" dtype="int64" mask_checksum="no-masked-elements" shape="(3, 4, 5, 6)"/>
</cube>
<cube dtype="int64" standard_name="air_temperature" units="K" var_name="air_temperature_0">
<attributes>
Expand Down Expand Up @@ -126,6 +126,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x2acdccca" dtype="int64" shape="(3, 4, 5, 6)"/>
<data checksum="0x2acdccca" dtype="int64" mask_checksum="no-masked-elements" shape="(3, 4, 5, 6)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/int64_data_netcdf3.cml
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Expand Up @@ -6,6 +6,6 @@
</attributes>
<coords/>
<cellMethods/>
<data checksum="0xecbb4b55" dtype="int32" shape="(2, 2)"/>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="no-masked-elements" shape="(2, 2)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_index_0.cml
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Expand Up @@ -18,6 +18,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x33af4275" dtype="float64" shape="(161, 320)"/>
<data checksum="0x33af4275" dtype="float64" mask_checksum="no-masked-elements" shape="(161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_index_1.cml
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Expand Up @@ -18,6 +18,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x3b59eb3a" dtype="float64" shape="(320,)"/>
<data checksum="0x3b59eb3a" dtype="float64" mask_checksum="no-masked-elements" shape="(320,)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_mix_0.cml
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Expand Up @@ -18,6 +18,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x33af4275" dtype="float64" shape="(161, 320)"/>
<data checksum="0x33af4275" dtype="float64" mask_checksum="no-masked-elements" shape="(161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_mix_1.cml
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Expand Up @@ -18,6 +18,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x63b2309e" dtype="float64" shape="(2, 2)"/>
<data checksum="0x63b2309e" dtype="float64" mask_checksum="no-masked-elements" shape="(2, 2)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_slice_0.cml
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Expand Up @@ -21,6 +21,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x43b7f443" dtype="float64" shape="(20, 161, 320)"/>
<data checksum="0x43b7f443" dtype="float64" mask_checksum="no-masked-elements" shape="(20, 161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_slice_1.cml
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Expand Up @@ -19,6 +19,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x3b37762d" dtype="float64" shape="(10, 161, 320)"/>
<data checksum="0x3b37762d" dtype="float64" mask_checksum="no-masked-elements" shape="(10, 161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_slice_2.cml
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Expand Up @@ -18,6 +18,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x3360dea9" dtype="float64" shape="(5, 161, 320)"/>
<data checksum="0x3360dea9" dtype="float64" mask_checksum="no-masked-elements" shape="(5, 161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_tuple_0.cml
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</coord>
</coords>
<cellMethods/>
<data checksum="0xc0efa99c" dtype="float64" shape="(6, 161, 320)"/>
<data checksum="0xc0efa99c" dtype="float64" mask_checksum="no-masked-elements" shape="(6, 161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_tuple_1.cml
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</coord>
</coords>
<cellMethods/>
<data checksum="0x5ce104b6" dtype="float64" shape="(4, 161, 320)"/>
<data checksum="0x5ce104b6" dtype="float64" mask_checksum="no-masked-elements" shape="(4, 161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_deferred_tuple_2.cml
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Expand Up @@ -18,6 +18,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xf40ada45" dtype="float64" shape="(2, 161, 320)"/>
<data checksum="0xf40ada45" dtype="float64" mask_checksum="no-masked-elements" shape="(2, 161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_global_xyt_hires.cml
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Expand Up @@ -90,6 +90,6 @@
<coord interval="6 minutes" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xab9e4b38" dtype="float32" shape="(31, 160, 320)"/>
<data checksum="0xab9e4b38" dtype="float32" mask_checksum="no-masked-elements" shape="(31, 160, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_global_xyt_total.cml
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Expand Up @@ -23,6 +23,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xb5b2139a" dtype="float64" shape="(31, 161, 320)"/>
<data checksum="0xb5b2139a" dtype="float64" mask_checksum="no-masked-elements" shape="(31, 161, 320)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_global_xyzt_gems.cml
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Expand Up @@ -24,7 +24,7 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x65252ed2" dtype="float64" shape="(1, 60, 181, 360)"/>
<data checksum="0x65252ed2" dtype="float64" mask_checksum="no-masked-elements" shape="(1, 60, 181, 360)"/>
</cube>
<cube dtype="float64" long_name="Logarithm of surface pressure" units="no_unit" var_name="lnsp">
<attributes>
Expand Down
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_global_xyzt_gems_iter_0.cml
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</coord>
</coords>
<cellMethods/>
<data checksum="0x65252ed2" dtype="float64" shape="(1, 60, 181, 360)"/>
<data checksum="0x65252ed2" dtype="float64" mask_checksum="no-masked-elements" shape="(1, 60, 181, 360)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_laea.cml
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Expand Up @@ -67,6 +67,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xf8a2bc63" dtype="float32" shape="(15, 15)"/>
<data checksum="0xf8a2bc63" dtype="float32" mask_checksum="no-masked-elements" shape="(15, 15)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_merc.cml
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Expand Up @@ -69,6 +69,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x4fd67588" dtype="float32" shape="(192, 192)"/>
<data checksum="0x4fd67588" dtype="float32" mask_checksum="no-masked-elements" shape="(192, 192)"/>
</cube>
</cubes>
4 changes: 2 additions & 2 deletions lib/iris/tests/results/netcdf/netcdf_monotonic.cml
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Expand Up @@ -16,7 +16,7 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xd4e7a32f" dtype="int32" shape="(3, 3, 3)"/>
<data checksum="0xd4e7a32f" dtype="int32" mask_checksum="no-masked-elements" shape="(3, 3, 3)"/>
</cube>
<cube dtype="int32" standard_name="eastward_wind" units="m s-1" var_name="wind2">
<attributes>
Expand All @@ -34,7 +34,7 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xd4e7a32f" dtype="int32" shape="(3, 3, 3)"/>
<data checksum="0xd4e7a32f" dtype="int32" mask_checksum="no-masked-elements" shape="(3, 3, 3)"/>
</cube>
<cube dtype="int32" standard_name="eastward_wind" units="m s-1" var_name="wind3">
<attributes>
Expand Down
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_rotated_xy_land.cml
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Expand Up @@ -67,6 +67,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x8b7ca96d" dtype="float32" shape="(95, 85)"/>
<data checksum="0x8b7ca96d" dtype="float32" mask_checksum="no-masked-elements" shape="(95, 85)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_rotated_xyt_precipitation.cml
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Expand Up @@ -62,6 +62,6 @@
<coord name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xafe5d01c" dtype="float32" shape="(4, 190, 174)"/>
<data checksum="0xafe5d01c" dtype="float32" mask_checksum="no-masked-elements" shape="(4, 190, 174)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_save_load_hybrid_height.cml
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Expand Up @@ -522,6 +522,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0x9554cc14" dtype="float32" shape="(6, 10, 83, 83)"/>
<data checksum="0x9554cc14" dtype="float32" mask_checksum="no-masked-elements" shape="(6, 10, 83, 83)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_save_load_ndim_auxiliary.cml
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<coord name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xafe5d01c" dtype="float32" shape="(4, 190, 174)"/>
<data checksum="0xafe5d01c" dtype="float32" mask_checksum="no-masked-elements" shape="(4, 190, 174)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_units_0.cml
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Expand Up @@ -14,6 +14,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xff4e3e81" dtype="int32" shape="(5,)"/>
<data checksum="0xff4e3e81" dtype="int32" mask_checksum="no-masked-elements" shape="(5,)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/netcdf_units_1.cml
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Expand Up @@ -17,6 +17,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xdbf2bfc2" dtype="int32" shape="(5,)"/>
<data checksum="0xdbf2bfc2" dtype="int32" mask_checksum="no-masked-elements" shape="(5,)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/netcdf/uint32_data_netcdf3.cml
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Expand Up @@ -6,6 +6,6 @@
</attributes>
<coords/>
<cellMethods/>
<data checksum="0xecbb4b55" dtype="int32" shape="(2, 2)"/>
<data checksum="0xecbb4b55" dtype="int32" mask_checksum="no-masked-elements" shape="(2, 2)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/system/supported_filetype_.nc.cml
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Expand Up @@ -40,6 +40,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xeba0a191" dtype="float32" shape="(60, 60)"/>
<data checksum="0xeba0a191" dtype="float32" mask_checksum="no-masked-elements" shape="(60, 60)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...cases/pp_to_cf_conversion/from_netcdf/000003000000.03.236.000128.1990.12.01.00.00.b_0.cml
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<coord interval="6 hour" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xcb5be595" dtype="float32" shape="(73, 96)"/>
<data checksum="0xcb5be595" dtype="float32" mask_checksum="no-masked-elements" shape="(73, 96)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...cases/pp_to_cf_conversion/from_netcdf/000003000000.03.236.004224.1990.12.01.00.00.b_0.cml
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<coord interval="6 hour" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xcb5be595" dtype="float32" shape="(73, 96)"/>
<data checksum="0xcb5be595" dtype="float32" mask_checksum="no-masked-elements" shape="(73, 96)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...cases/pp_to_cf_conversion/from_netcdf/000003000000.03.236.008320.1990.12.01.00.00.b_0.cml
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Expand Up @@ -45,6 +45,6 @@
</coord>
</coords>
<cellMethods/>
<data checksum="0xde505c47" dtype="float32" shape="(73, 96)"/>
<data checksum="0xde505c47" dtype="float32" mask_checksum="no-masked-elements" shape="(73, 96)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...cases/pp_to_cf_conversion/from_netcdf/000003000000.16.202.000128.1860.09.01.00.00.b_0.cml
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<coord interval="4 hour" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xafcd52d4" dtype="float32" shape="(3, 73, 96)"/>
<data checksum="0xafcd52d4" dtype="float32" mask_checksum="no-masked-elements" shape="(3, 73, 96)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...cases/pp_to_cf_conversion/from_netcdf/008000000000.44.101.000128.1890.09.01.00.00.b_0.cml
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<coord interval="24 hour" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0x6475db6b" dtype="float32" shape="(20, 16)"/>
<data checksum="0x6475db6b" dtype="float32" mask_checksum="no-masked-elements" shape="(20, 16)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/usecases/pp_to_cf_conversion/from_netcdf/12187.b_0.cml
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<coord interval="1 hour" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xc92d9fa6" dtype="float32" shape="(38, 145, 192)"/>
<data checksum="0xc92d9fa6" dtype="float32" mask_checksum="no-masked-elements" shape="(38, 145, 192)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...tests/results/usecases/pp_to_cf_conversion/from_netcdf/HadCM2_ts_SAT_ann_18602100.b_0.cml
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<coord name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0xff272869" dtype="float32" shape="(240, 3)"/>
<data checksum="0xff272869" dtype="float32" mask_checksum="no-masked-elements" shape="(240, 3)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/usecases/pp_to_cf_conversion/from_netcdf/aaxzc_level_lat_orig.b_0.cml
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<coord name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0x9c335005" dtype="float32" shape="(2, 15, 73)"/>
<data checksum="0x9c335005" dtype="float32" mask_checksum="no-masked-elements" shape="(2, 15, 73)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...s/tests/results/usecases/pp_to_cf_conversion/from_netcdf/aaxzc_lon_lat_press_orig.b_0.cml
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<coord name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0x8d2a3247" dtype="float32" shape="(2, 15, 73, 96)"/>
<data checksum="0x8d2a3247" dtype="float32" mask_checksum="no-masked-elements" shape="(2, 15, 73, 96)"/>
</cube>
</cubes>
2 changes: 1 addition & 1 deletion ...iris/tests/results/usecases/pp_to_cf_conversion/from_netcdf/aaxzc_lon_lat_several.b_0.cml
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<coord interval="1 hour" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0x8ab46e19" dtype="float32" shape="(14, 73, 96)"/>
<data checksum="0x8ab46e19" dtype="float32" mask_checksum="no-masked-elements" shape="(14, 73, 96)"/>
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</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/usecases/pp_to_cf_conversion/from_netcdf/aaxzc_n10r13xy.b_0.cml
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<coord interval="1 hour" name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0x8b5afb47" dtype="float32" shape="(4, 13, 10)"/>
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</cube>
</cubes>
2 changes: 1 addition & 1 deletion lib/iris/tests/results/usecases/pp_to_cf_conversion/from_netcdf/aaxzc_time_press.b_0.cml
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<coord name="time"/>
</cellMethod>
</cellMethods>
<data checksum="0x46976132" dtype="float32" shape="(15, 4)"/>
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2 changes: 1 addition & 1 deletion lib/iris/tests/results/usecases/pp_to_cf_conversion/from_netcdf/aaxzc_tseries.b_0.cml
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2 changes: 1 addition & 1 deletion .../tests/results/usecases/pp_to_cf_conversion/from_netcdf/abcza_pa19591997_daily_29.b_0.cml
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2 changes: 1 addition & 1 deletion .../tests/results/usecases/pp_to_cf_conversion/from_netcdf/abcza_pa19591997_daily_29.b_1.cml
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<coord interval="1 hour" name="time"/>
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2 changes: 1 addition & 1 deletion .../tests/results/usecases/pp_to_cf_conversion/from_netcdf/abcza_pa19591997_daily_29.b_2.cml
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Expand Up @@ -55,6 +55,6 @@
<coord interval="1 hour" name="time"/>
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2 changes: 1 addition & 1 deletion lib/iris/tests/results/usecases/pp_to_cf_conversion/from_netcdf/abxpa_press_lat.b_0.cml
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