Unstructured Scheme - Basic GridInfo Handling by stephenworsley · Pull Request #32 · SciTools/iris-esmf-regrid

stephenworsley · 2021-03-01T17:34:54Z

This copies the most basic functionality from #26 to integrate rectilinear grid handling. This allows development of the unstructured regridder to continue.

codecov · 2021-03-01T17:36:19Z

Codecov Report

Merging #32 (d05784c) into unstructured_scheme (bddb48e) will increase coverage by 2.64%.
The diff coverage is 100.00%.

@@                   Coverage Diff                   @@
##           unstructured_scheme      #32      +/-   ##
=======================================================
+ Coverage                88.43%   91.08%   +2.64%     
=======================================================
  Files                       10       11       +1     
  Lines                      346      415      +69     
=======================================================
+ Hits                       306      378      +72     
+ Misses                      40       37       -3

Impacted Files	Coverage Δ
esmf_regrid/experimental/unstructured_scheme.py	`48.07% <100.00%> (+16.36%)`	⬆️
...ntal/unstructured_scheme/test__cube_to_GridInfo.py	`100.00% <100.00%> (ø)`
esmf_regrid/esmf_regridder.py	`92.92% <0.00%> (+2.02%)`	⬆️

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update bddb48e...d05784c. Read the comment docs.

esmf_regrid/experimental/unstructured_scheme.py

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py

stephenworsley · 2021-03-02T17:18:48Z

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py

+    rg = Regridder(gridinfo, gridinfo)
+    expected_weights = scipy.sparse.identity(n_lats * n_lons)
+    assert np.array_equal(expected_weights.todense(), rg.weight_matrix.todense())
+


Separate these into two tests, consider the naming convention (keep consistent with iris).

esmf_regrid/experimental/unstructured_scheme.py

abooton · 2021-03-02T17:27:54Z

esmf_regrid/experimental/unstructured_scheme.py

    # Returns a GridInfo object describing the horizontal grid of the cube.
    # This may be inherited from code written for the rectilinear regridding scheme.
-    pass
+    lat = cube.coord("latitude")


Do we need to confirm that the incoming cube is a gridded cube?

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py

abooton · 2021-03-02T17:46:39Z

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py

+
+def test_cube_to_GridInfo():
+    """Basic test for :func:`~esmf_regrid.experimental.unstructured_scheme._cube_to_GridInfo`."""
+    n_lats = 5


Maybe we should have a test for n_lats=1. I believe this could be passed in. Not sure what the final behaviour is!

esmf_regrid/tests/unit/experimental/unstructured_scheme/test__cube_to_GridInfo.py

abooton · 2021-03-03T15:43:55Z

esmf_regrid/tests/unit/experimental/unstructured_scheme/test__cube_to_GridInfo.py

+
+
+def _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=False):
+    lon_lower, lon_upper = lon_bounds


Lines 13-17 are identical to 22-27. And only the ll_bound_span needs to be returned in both cases.
Lets refactor and tidy this up - then its looking good.

abooton · 2021-03-03T15:45:07Z

esmf_regrid/experimental/unstructured_scheme.py

+    lat = cube.coord("latitude")
+    # Ensure coords come from a proper grid.
+    assert isinstance(lon, iris.coords.DimCoord)
+    assert isinstance(lat, iris.coords.DimCoord)


I like this - but I've just had a thought as to whether the scalar passes. Let's just confirm, and remove these lines if they are more problematic than helpful!

The scalar test is passing fine with this.
Having discussed this with @stephenworsley , we think this is because the information is added to the Cube as a DimCoord, then it becomes a scalar as it has length 1. Hence the test and the data process correctly.

* Unstructured scheme skeleton (#31) * create skeleton of unstructured regridding code This code is primarily based on Iris's current Area weighted regridding scheme, with the required adaptions for accepting unstructred UGRID data. * Unstructured Scheme - Basic GridInfo Handling (#32) Add basic `GridInfo` function and associated tests. It returns an ESMF regridding object for gridded data. * Unstructured scheme iris source (#33) * refresh cirrus-ci and nox * add iris artifact support * deal with special-case cirrus-ci quoting * review actions * Unstructured Scheme - Basic MeshInfo Handling (#36) * provide iris Mesh to MeshInfo conversion * test against iris feature branch * lint fixes and documentation * fix typo * address review comments. * change tests to better reflect UGRID orientation * address review comments. * address review comments * ASCII art fix * Unstructured Scheme - Cube Creation 2D (#39) * support creation of 2D cubes * lint fixes * rewrite test * remove mesh from _create_cube arguments * add TODO * add TODO * Unstructured Scheme - Mesh Fetching (#46) * support mesh fetching * fix docstring * lint fix * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add and restructure tests * fix test * fix test * address review comments * address review comments Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Bill Little <bill.little@metoffice.gov.uk> Co-authored-by: Anna Booton <anna.booton@metoffice.gov.uk> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Unstructured scheme skeleton (SciTools#31) * create skeleton of unstructured regridding code This code is primarily based on Iris's current Area weighted regridding scheme, with the required adaptions for accepting unstructred UGRID data. * Unstructured Scheme - Basic GridInfo Handling (SciTools#32) Add basic `GridInfo` function and associated tests. It returns an ESMF regridding object for gridded data. * Unstructured scheme iris source (SciTools#33) * refresh cirrus-ci and nox * add iris artifact support * deal with special-case cirrus-ci quoting * review actions * Unstructured Scheme - Basic MeshInfo Handling (SciTools#36) * provide iris Mesh to MeshInfo conversion * test against iris feature branch * lint fixes and documentation * fix typo * address review comments. * change tests to better reflect UGRID orientation * address review comments. * address review comments * ASCII art fix * Unstructured Scheme - Cube Creation 2D (SciTools#39) * support creation of 2D cubes * lint fixes * rewrite test * remove mesh from _create_cube arguments * add TODO * add TODO * Unstructured Scheme - Mesh Fetching (SciTools#46) * support mesh fetching * fix docstring * lint fix * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add docstrings * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add and restructure tests * fix test * fix test * address review comments * address review comments Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Bill Little <bill.little@metoffice.gov.uk> Co-authored-by: Anna Booton <anna.booton@metoffice.gov.uk> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

stephenworsley added 2 commits March 1, 2021 17:25

flesh out unstructured scheme GridInfo handling

ef6d46c

add testing

6a9ac88

stephenworsley added 4 commits March 2, 2021 09:44

lint fixes

adb8e92

add tests

3f85470

simplify sparse array comparison

68f6307

lint fixes

e31bbb2

stephenworsley commented Mar 2, 2021

View reviewed changes

esmf_regrid/experimental/unstructured_scheme.py Show resolved Hide resolved

stephenworsley commented Mar 2, 2021

View reviewed changes

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py Outdated Show resolved Hide resolved

abooton reviewed Mar 2, 2021

View reviewed changes

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py Outdated Show resolved Hide resolved

stephenworsley commented Mar 2, 2021

View reviewed changes

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py Outdated Show resolved Hide resolved

stephenworsley commented Mar 2, 2021

View reviewed changes

abooton reviewed Mar 2, 2021

View reviewed changes

esmf_regrid/experimental/unstructured_scheme.py Show resolved Hide resolved

abooton reviewed Mar 2, 2021

View reviewed changes

esmf_regrid/tests/unit/experimental/unstructured_scheme/test_cube_to_GridInfo.py Outdated Show resolved Hide resolved

abooton reviewed Mar 2, 2021

View reviewed changes

address review comments

49bb5f0

abooton reviewed Mar 3, 2021

View reviewed changes

esmf_regrid/tests/unit/experimental/unstructured_scheme/test__cube_to_GridInfo.py Outdated Show resolved Hide resolved

stephenworsley added 2 commits March 3, 2021 15:19

address review comments

98bdf86

swap lat/lon code order

6c25a67

abooton reviewed Mar 3, 2021

View reviewed changes

stephenworsley added 2 commits March 3, 2021 15:48

address review comments

8a53c28

address review comments

d05784c

abooton merged commit 036d3bb into SciTools:unstructured_scheme Mar 3, 2021

stephenworsley mentioned this pull request Mar 8, 2021

Unstructured Scheme - Basic MeshInfo Handling #36

Merged

trexfeathers mentioned this pull request Feb 21, 2022

update changelog #151

Merged

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Unstructured Scheme - Basic GridInfo Handling#32

Unstructured Scheme - Basic GridInfo Handling#32
abooton merged 11 commits intoSciTools:unstructured_schemefrom
stephenworsley:unstructured_scheme_gridinfo

stephenworsley commented Mar 1, 2021

Uh oh!

codecov bot commented Mar 1, 2021 •

edited

Loading

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

stephenworsley Mar 2, 2021

Uh oh!

Uh oh!

abooton Mar 2, 2021

Uh oh!

Uh oh!

abooton Mar 2, 2021

Uh oh!

Uh oh!

abooton Mar 3, 2021

Uh oh!

abooton Mar 3, 2021

Uh oh!

abooton Mar 3, 2021

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

2 participants



		def _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=False):
		lon_lower, lon_upper = lon_bounds

Conversation

stephenworsley commented Mar 1, 2021

Uh oh!

codecov bot commented Mar 1, 2021 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Codecov Report

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

stephenworsley Mar 2, 2021

Choose a reason for hiding this comment

Uh oh!

Uh oh!

abooton Mar 2, 2021

Choose a reason for hiding this comment

Uh oh!

Uh oh!

abooton Mar 2, 2021

Choose a reason for hiding this comment

Uh oh!

Uh oh!

abooton Mar 3, 2021

Choose a reason for hiding this comment

Uh oh!

abooton Mar 3, 2021

Choose a reason for hiding this comment

Uh oh!

abooton Mar 3, 2021

Choose a reason for hiding this comment

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

2 participants

codecov bot commented Mar 1, 2021 •

edited

Loading