Incorporate uniprot id into gene info #160
Open
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
AG-1392 - Incorporate uniprot ID into gene_info
Adding
uniprotkb_accessions
column to thegene_info
dataset using the uniprot to ensembl mapping file (syn54113663).Changes
config.yaml
andtest_config.yaml
to include the uniprot mapping datasetadd_uniprot_id_to_gene_info()
to add theuniprotkb_accessions
columnadd_uniprot_id_to_gene_info()
functionadd_uniprot_id_to_gene_info()
functiongene_info
tests to include auniprotkb_accessions
columngene_info
output assets to include auniprotkb_accessions
columnensg_to_uniprot_mapping_good.tsv
to thegene_info
testing assetsuniprotkb_accessions
column