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| # Revdeps | ||
|
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| ## New problems (1) | ||
|
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| |package |version |error |warning |note | | ||
| |:-------|:-------|:--------|:-------|:------| | ||
| |[fr](problems.md#fr)|0.5.1 |1 __+2__ |__+1__ |__+1__ | | ||
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revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble.tar.gz
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revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/DESCRIPTION
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| Package: crumble | ||
| Type: Package | ||
| Title: Flexible and General Mediation Analysis Using Riesz Representers | ||
| Version: 0.1.0 | ||
| Authors@R: | ||
| c(person(given = "Nicholas", | ||
| family = "Williams", | ||
| role = c("aut", "cre", "cph"), | ||
| email = "[email protected]", | ||
| comment = c(ORCID = "0000-0002-1378-4831")), | ||
| person(given = "Richard", | ||
| family = "Liu", | ||
| email = "[email protected]", | ||
| role = c("ctb")), | ||
| person(given = "Iván", | ||
| family = "Díaz", | ||
| email = "[email protected]", | ||
| role = c("aut", "cph"), | ||
| comment = c(ORCID = "0000-0001-9056-2047"))) | ||
| Maintainer: Nicholas Williams <[email protected]> | ||
| Description: Implements a modern, unified estimation strategy for common | ||
| mediation estimands (natural effects, organic effects, interventional effects, | ||
| and recanting twins) in combination with modified treatment policies as | ||
| described in Liu, Williams, Rudolph, and Díaz (2024) | ||
| <doi:10.48550/arXiv.2408.14620>. Estimation makes use of recent advancements | ||
| in Riesz-learning to estimate a set of required nuisance parameters with | ||
| deep learning. The result is the capability to estimate mediation effects with | ||
| binary, categorical, continuous, or multivariate exposures with | ||
| high-dimensional mediators and mediator-outcome confounders using machine | ||
| learning. | ||
| License: GPL (>= 3) | ||
| Encoding: UTF-8 | ||
| Depends: R (>= 4.0.0) | ||
| RoxygenNote: 7.3.2 | ||
| Imports: checkmate, Matrix, origami, torch, Rsymphony, purrr, cli, S7, | ||
| data.table, coro, generics, lmtp, mlr3superlearner, progressr | ||
| Suggests: testthat (>= 3.0.0), truncnorm, mma | ||
| Config/testthat/edition: 3 | ||
| NeedsCompilation: no | ||
| Packaged: 2024-09-17 16:37:07 UTC; nicholaswilliams | ||
| Author: Nicholas Williams [aut, cre, cph] | ||
| (<https://orcid.org/0000-0002-1378-4831>), | ||
| Richard Liu [ctb], | ||
| Iván Díaz [aut, cph] (<https://orcid.org/0000-0001-9056-2047>) | ||
| Repository: CRAN | ||
| Date/Publication: 2024-09-18 11:50:05 UTC |
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...d.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/new/crumble.Rcheck/crumble-Ex.Rout
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|
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| R version 4.3.1 (2023-06-16) -- "Beagle Scouts" | ||
| Copyright (C) 2023 The R Foundation for Statistical Computing | ||
| Platform: x86_64-pc-linux-gnu (64-bit) | ||
|
|
||
| R is free software and comes with ABSOLUTELY NO WARRANTY. | ||
| You are welcome to redistribute it under certain conditions. | ||
| Type 'license()' or 'licence()' for distribution details. | ||
|
|
||
| R is a collaborative project with many contributors. | ||
| Type 'contributors()' for more information and | ||
| 'citation()' on how to cite R or R packages in publications. | ||
|
|
||
| Type 'demo()' for some demos, 'help()' for on-line help, or | ||
| 'help.start()' for an HTML browser interface to help. | ||
| Type 'q()' to quit R. | ||
|
|
||
| > pkgname <- "crumble" | ||
| > source(file.path(R.home("share"), "R", "examples-header.R")) | ||
| > options(warn = 1) | ||
| > library('crumble') | ||
| > | ||
| > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') | ||
| > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') | ||
| > cleanEx() | ||
| > nameEx("crumble") | ||
| > ### * crumble | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: crumble | ||
| > ### Title: Flexible and general mediation analysis | ||
| > ### Aliases: crumble | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > | ||
| > | ||
| > | ||
| > cleanEx() | ||
| > nameEx("crumble_control") | ||
| > ### * crumble_control | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: crumble_control | ||
| > ### Title: Crumble control parameters | ||
| > ### Aliases: crumble_control | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > if (torch::torch_is_installed()) crumble_control(crossfit_folds = 5) | ||
| > | ||
| > | ||
| > | ||
| > cleanEx() | ||
| > nameEx("sequential_module") | ||
| > ### * sequential_module | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: sequential_module | ||
| > ### Title: Sequential neural network module function factory | ||
| > ### Aliases: sequential_module | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > if (torch::torch_is_installed()) sequential_module() | ||
| > | ||
| > | ||
| > | ||
| > cleanEx() | ||
| > nameEx("tidy.crumble") | ||
| > ### * tidy.crumble | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: tidy.crumble | ||
| > ### Title: Tidy a(n) crumble object | ||
| > ### Aliases: tidy.crumble | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > | ||
| > | ||
| > | ||
| > ### * <FOOTER> | ||
| > ### | ||
| > cleanEx() | ||
| > options(digits = 7L) | ||
| > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") | ||
| Time elapsed: 0.748 0.052 0.801 0 0 | ||
| > grDevices::dev.off() | ||
| null device | ||
| 1 | ||
| > ### | ||
| > ### Local variables: *** | ||
| > ### mode: outline-minor *** | ||
| > ### outline-regexp: "\\(> \\)?### [*]+" *** | ||
| > ### End: *** | ||
| > quit('no') |
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...index/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/new/crumble.Rcheck/tests/testthat.Rout
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|
|
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| R version 4.3.1 (2023-06-16) -- "Beagle Scouts" | ||
| Copyright (C) 2023 The R Foundation for Statistical Computing | ||
| Platform: x86_64-pc-linux-gnu (64-bit) | ||
|
|
||
| R is free software and comes with ABSOLUTELY NO WARRANTY. | ||
| You are welcome to redistribute it under certain conditions. | ||
| Type 'license()' or 'licence()' for distribution details. | ||
|
|
||
| R is a collaborative project with many contributors. | ||
| Type 'contributors()' for more information and | ||
| 'citation()' on how to cite R or R packages in publications. | ||
|
|
||
| Type 'demo()' for some demos, 'help()' for on-line help, or | ||
| 'help.start()' for an HTML browser interface to help. | ||
| Type 'q()' to quit R. | ||
|
|
||
| > # This file is part of the standard setup for testthat. | ||
| > # It is recommended that you do not modify it. | ||
| > # | ||
| > # Where should you do additional test configuration? | ||
| > # Learn more about the roles of various files in: | ||
| > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview | ||
| > # * https://testthat.r-lib.org/articles/special-files.html | ||
| > | ||
| > library(testthat) | ||
| > library(crumble) | ||
| > | ||
| > test_check("crumble") | ||
| [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] | ||
| > | ||
| > proc.time() | ||
| user system elapsed | ||
| 0.436 0.101 0.438 |
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...d.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/old/crumble.Rcheck/crumble-Ex.Rout
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,101 @@ | ||
|
|
||
| R version 4.3.1 (2023-06-16) -- "Beagle Scouts" | ||
| Copyright (C) 2023 The R Foundation for Statistical Computing | ||
| Platform: x86_64-pc-linux-gnu (64-bit) | ||
|
|
||
| R is free software and comes with ABSOLUTELY NO WARRANTY. | ||
| You are welcome to redistribute it under certain conditions. | ||
| Type 'license()' or 'licence()' for distribution details. | ||
|
|
||
| R is a collaborative project with many contributors. | ||
| Type 'contributors()' for more information and | ||
| 'citation()' on how to cite R or R packages in publications. | ||
|
|
||
| Type 'demo()' for some demos, 'help()' for on-line help, or | ||
| 'help.start()' for an HTML browser interface to help. | ||
| Type 'q()' to quit R. | ||
|
|
||
| > pkgname <- "crumble" | ||
| > source(file.path(R.home("share"), "R", "examples-header.R")) | ||
| > options(warn = 1) | ||
| > library('crumble') | ||
| > | ||
| > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') | ||
| > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') | ||
| > cleanEx() | ||
| > nameEx("crumble") | ||
| > ### * crumble | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: crumble | ||
| > ### Title: Flexible and general mediation analysis | ||
| > ### Aliases: crumble | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > | ||
| > | ||
| > | ||
| > cleanEx() | ||
| > nameEx("crumble_control") | ||
| > ### * crumble_control | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: crumble_control | ||
| > ### Title: Crumble control parameters | ||
| > ### Aliases: crumble_control | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > if (torch::torch_is_installed()) crumble_control(crossfit_folds = 5) | ||
| > | ||
| > | ||
| > | ||
| > cleanEx() | ||
| > nameEx("sequential_module") | ||
| > ### * sequential_module | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: sequential_module | ||
| > ### Title: Sequential neural network module function factory | ||
| > ### Aliases: sequential_module | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > if (torch::torch_is_installed()) sequential_module() | ||
| > | ||
| > | ||
| > | ||
| > cleanEx() | ||
| > nameEx("tidy.crumble") | ||
| > ### * tidy.crumble | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: tidy.crumble | ||
| > ### Title: Tidy a(n) crumble object | ||
| > ### Aliases: tidy.crumble | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > | ||
| > | ||
| > | ||
| > ### * <FOOTER> | ||
| > ### | ||
| > cleanEx() | ||
| > options(digits = 7L) | ||
| > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") | ||
| Time elapsed: 0.765 0.029 0.794 0 0 | ||
| > grDevices::dev.off() | ||
| null device | ||
| 1 | ||
| > ### | ||
| > ### Local variables: *** | ||
| > ### mode: outline-minor *** | ||
| > ### outline-regexp: "\\(> \\)?### [*]+" *** | ||
| > ### End: *** | ||
| > quit('no') |
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...index/b283e3a4-953b-4875-b3dc-ee76fe345f59/crumble/old/crumble.Rcheck/tests/testthat.Rout
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
|
|
||
| R version 4.3.1 (2023-06-16) -- "Beagle Scouts" | ||
| Copyright (C) 2023 The R Foundation for Statistical Computing | ||
| Platform: x86_64-pc-linux-gnu (64-bit) | ||
|
|
||
| R is free software and comes with ABSOLUTELY NO WARRANTY. | ||
| You are welcome to redistribute it under certain conditions. | ||
| Type 'license()' or 'licence()' for distribution details. | ||
|
|
||
| R is a collaborative project with many contributors. | ||
| Type 'contributors()' for more information and | ||
| 'citation()' on how to cite R or R packages in publications. | ||
|
|
||
| Type 'demo()' for some demos, 'help()' for on-line help, or | ||
| 'help.start()' for an HTML browser interface to help. | ||
| Type 'q()' to quit R. | ||
|
|
||
| > # This file is part of the standard setup for testthat. | ||
| > # It is recommended that you do not modify it. | ||
| > # | ||
| > # Where should you do additional test configuration? | ||
| > # Learn more about the roles of various files in: | ||
| > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview | ||
| > # * https://testthat.r-lib.org/articles/special-files.html | ||
| > | ||
| > library(testthat) | ||
| > library(crumble) | ||
| > | ||
| > test_check("crumble") | ||
| [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] | ||
| > | ||
| > proc.time() | ||
| user system elapsed | ||
| 0.434 0.102 0.459 |
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revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr/DESCRIPTION
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| Package: fr | ||
| Title: Frictionless Standards | ||
| Version: 0.5.1 | ||
| Authors@R: | ||
| person("Cole", "Brokamp", , "[email protected]", role = c("aut", "cre", "cph"), | ||
| comment = c(ORCID = "0000-0002-0289-3151")) | ||
| Description: A "tabular-data-resource" (<https://specs.frictionlessdata.io/tabular-data-resource/>) is a simple format to describe a singular tabular data resource such as a CSV file. It includes support both for metadata such as author and title and a schema to describe the data, for example the types of the fields/columns in the data. Create a tabular-data-resource by providing a data.frame and specifying metadata. Write and read tabular-data-resources to and from disk. | ||
| License: MIT + file LICENSE | ||
| Encoding: UTF-8 | ||
| RoxygenNote: 7.2.3 | ||
| Imports: cli, purrr, vroom, S7 (>= 0.1.1), tibble, tidyselect, yaml, | ||
| dplyr, rlang | ||
| Suggests: testthat (>= 3.0.0), withr, fs, knitr, rmarkdown | ||
| Config/testthat/edition: 3 | ||
| Config/testthat/parallel: true | ||
| URL: https://github.com/cole-brokamp/fr, | ||
| https://cole-brokamp.github.io/fr/ | ||
| BugReports: https://github.com/cole-brokamp/fr/issues | ||
| VignetteBuilder: knitr | ||
| NeedsCompilation: no | ||
| Packaged: 2023-11-30 19:49:46 UTC; cole | ||
| Author: Cole Brokamp [aut, cre, cph] (<https://orcid.org/0000-0002-0289-3151>) | ||
| Maintainer: Cole Brokamp <[email protected]> | ||
| Repository: CRAN | ||
| Date/Publication: 2023-11-30 20:00:02 UTC |
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revdep/cloud.noindex/b283e3a4-953b-4875-b3dc-ee76fe345f59/fr/new/fr.Rcheck/fr-Ex.Rout
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,41 @@ | ||
|
|
||
| R version 4.3.1 (2023-06-16) -- "Beagle Scouts" | ||
| Copyright (C) 2023 The R Foundation for Statistical Computing | ||
| Platform: x86_64-pc-linux-gnu (64-bit) | ||
|
|
||
| R is free software and comes with ABSOLUTELY NO WARRANTY. | ||
| You are welcome to redistribute it under certain conditions. | ||
| Type 'license()' or 'licence()' for distribution details. | ||
|
|
||
| R is a collaborative project with many contributors. | ||
| Type 'contributors()' for more information and | ||
| 'citation()' on how to cite R or R packages in publications. | ||
|
|
||
| Type 'demo()' for some demos, 'help()' for on-line help, or | ||
| 'help.start()' for an HTML browser interface to help. | ||
| Type 'q()' to quit R. | ||
|
|
||
| > pkgname <- "fr" | ||
| > source(file.path(R.home("share"), "R", "examples-header.R")) | ||
| > options(warn = 1) | ||
| > library('fr') | ||
| > | ||
| > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv') | ||
| > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') | ||
| > cleanEx() | ||
| > nameEx("as_data_frame") | ||
| > ### * as_data_frame | ||
| > | ||
| > flush(stderr()); flush(stdout()) | ||
| > | ||
| > ### Name: as_data_frame | ||
| > ### Title: Coerce a 'fr_tdr' object into a data frame | ||
| > ### Aliases: as_data_frame | ||
| > | ||
| > ### ** Examples | ||
| > | ||
| > as_fr_tdr(mtcars, name = "mtcars") |> | ||
| + as_data_frame() | ||
| Error: <fr::fr_schema> object is invalid: | ||
| - all items in @fields should be fr_field objects | ||
| Execution halted |
Oops, something went wrong.