Test and patch for short-name-app-config bug

Fixes #241

When R executes AP.exe it uses the `Sys.which` function to resolve the executable
name. This function uses the Windows 8.3 short-name functionality by defualt which
launches the application as ANALYS~1.exe. Since the application is no longer named
correctly, the AnalysisPrograms.exe.config file cannot be loaded and all of our
application binding redirects are ignored. Subsequently the fusion assembly loader
throws errors like:

```
  System.Reflection.ReflectionTypeLoadException: Unable to load one or more of the requested types.
	- Could not load file or assembly 'System.Numerics.Vectors, Version=4.1.3.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a' or one of its dependencies. The located assembly's manifest definition does not match the assembly reference. (Exception from HRESULT: 0x80131040)

```

In addition to the stack overflow post that should how to update the current domain's
App.Config file and settings, I also had to force Fusion to redo it's setup. This method,
is to say the least, fragile, and we can expect it to fail in the port to .NET Core.

Additionally added a AP_DEFAULT_LOG_VERBOSITY flag that set the log level verbosity
before the command line is parsed.

Additionally added a few extension method helpers and associated tests

.editorconfig

@@ -96,7 +96,7 @@ csharp_style_var_when_type_is_apparent = true:none
 csharp_style_var_elsewhere = true:none
 # Expression-bodied members
 # https://docs.microsoft.com/en-us/visualstudio/ide/editorconfig-code-style-settings-reference#expression_bodied_members
-csharp_style_expression_bodied_methods = when_on_single_line:suggestion
+csharp_style_expression_bodied_methods = when_on_single_line:hint
 csharp_style_expression_bodied_constructors = when_on_single_line:suggestion
 csharp_style_expression_bodied_operators = true:warning
 csharp_style_expression_bodied_properties = true:warning

docs/developing.md

@@ -1 +1 @@
-See [Contributing](https://github.com/QutEcoacoustics/audio-analysis/blob/master/CONTRIBUTING.md)
+See [Contributing](https://github.com/QutEcoacoustics/audio-analysis/blob/master/CONTRIBUTING.md)

src/Acoustics.Shared/Acoustics.Shared.csproj

@@ -209,6 +209,7 @@
     <Compile Include="Csv\Csv.cs" />
     <Compile Include="Csv\ISetPointConverter.cs" />
     <Compile Include="Debugging\AutoAttachVs.cs" />
+    <Compile Include="Extensions\EnumExtensions.cs" />
     <Compile Include="Enums.cs" />
     <Compile Include="ExpressionVisitor.cs" />
     <Compile Include="Extensions\ArrayExtensions.cs" />

src/Acoustics.Shared/Enums.cs

@@ -1,4 +1,4 @@
-// <copyright file="Enums.cs" company="QutEcoacoustics">
+// <copyright file="Enums.cs" company="QutEcoacoustics">
 // All code in this file and all associated files are the copyright and property of the QUT Ecoacoustics Research Group (formerly MQUTeR, and formerly QUT Bioacoustics Research Group).
 // </copyright>
 
@@ -25,9 +25,4 @@ public enum ImageChrome
         Without = 0,
         With = 1,
     }
-
-    public static class EnumExtenstions
-    {
-        public static ImageChrome ToImageChrome(this bool chromeOrNot) => chromeOrNot ? ImageChrome.With : ImageChrome.Without;
-    }
 }

src/Acoustics.Shared/Extensions/EnumExtensions.cs

@@ -0,0 +1,23 @@
+// <copyright file="EnumExtensions.cs" company="QutEcoacoustics">
+// All code in this file and all associated files are the copyright and property of the QUT Ecoacoustics Research Group (formerly MQUTeR, and formerly QUT Bioacoustics Research Group).
+// </copyright>
+
+namespace System
+{
+    using Acoustics.Shared;
+
+    public static class EnumExtensions
+    {
+        public static ImageChrome ToImageChrome(this bool chromeOrNot) => chromeOrNot ? ImageChrome.With : ImageChrome.Without;
+
+        public static string PrintEnumOptions(this Type @enum)
+        {
+            if (@enum == null || !@enum.IsEnum)
+            {
+                throw new ArgumentException($"{nameof(PrintEnumOptions)} must only be used on an enum type", nameof(@enum));
+            }
+
+            return Enum.GetValues(@enum).Join("|");
+        }
+    }
+}

src/Acoustics.Shared/Extensions/EnumerableExtensions.cs

@@ -7,12 +7,14 @@
 // ReSharper disable once CheckNamespace
 namespace System
 {
+    using System.Collections;
+    using System.Collections.Generic;
+    using System.Linq;
+    using System.Text;
+    using System.Threading.Tasks;
     using Acoustics.Shared;
     using Acoustics.Shared.Contracts;
-    using Collections.Generic;
     using JetBrains.Annotations;
-    using Linq;
-    using Threading.Tasks;
 
     public static class EnumerableExtensions
     {
@@ -311,5 +313,20 @@ public static IEnumerable<T> Append<T>(this IEnumerable<T> items, T newItem)
 
             yield return newItem;
         }
+
+        public static string Join(this IEnumerable items, string delimiter = " ") => Join(items.Cast<object>(), delimiter);
+
+        public static string Join<T>(this IEnumerable<T> items, string delimiter = " ")
+        {
+            var result = new StringBuilder();
+            foreach (var item in items)
+            {
+                result.Append(item);
+                result.Append(delimiter);
+            }
+
+            // return one delimiter length less because we always add a delimiter on the end
+            return result.ToString(0, result.Length - delimiter.Length);
+        }
     }
 }

src/AnalysisPrograms/AnalysisPrograms.csproj

@@ -80,6 +80,9 @@
     <Reference Include="Equ, Version=2.0.2.0, Culture=neutral, processorArchitecture=MSIL">
       <HintPath>..\..\packages\Equ.2.0.2\lib\netstandard1.5\Equ.dll</HintPath>
     </Reference>
+    <Reference Include="Fasterflect, Version=2.1.3.0, Culture=neutral, PublicKeyToken=38d18473284c1ca7, processorArchitecture=MSIL">
+      <HintPath>..\..\packages\fasterflect.2.1.3\lib\net40\Fasterflect.dll</HintPath>
+    </Reference>
     <Reference Include="FSharp.Core, Version=4.4.3.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a, processorArchitecture=MSIL">
       <HintPath>..\..\packages\FSharp.Core.4.3.4\lib\net45\FSharp.Core.dll</HintPath>
     </Reference>

src/AnalysisPrograms/CheckEnvironment.cs

@@ -6,6 +6,7 @@ namespace AnalysisPrograms
 {
     using System;
     using System.Collections.Generic;
+    using System.Diagnostics;
     using System.IO;
     using System.Linq;
     using System.Reflection;
@@ -30,6 +31,7 @@ public class CheckEnvironment
         private int Execute(Arguments arguments)
         {
             var errors = new List<string>();
+
             Log.Info("Checking required executables and libraries can be found and loaded");
 
             // this is an important call used in analyze long recordings.

src/AnalysisPrograms/MainEntry.cs

@@ -32,7 +32,10 @@ public static async Task<int> Main(string[] args)
             // Uses an env var to  attach debugger before argument parsing
             AttachDebugger(ApAutoAttach ? DebugOptions.YesSilent : DebugOptions.No);
 
-            Logging = new Logging(colorConsole: !ApPlainLogging, Level.Info, quietConsole: false);
+            Logging = new Logging(
+                colorConsole: !ApPlainLogging,
+                VerbosityToLevel(ApDefaultLogVerbosity ?? LogVerbosity.Info),
+                quietConsole: false);
 
             Copyright();