Scripts for our single-step NN-MM paper. Julia version 1.8.2 was used.
Below is the description of each folder:
| Folder name | Description |
|---|---|
| data | data and scripts to simulate phenotypes |
| analysis | scripts to run SSNNMM and conventional single-step |
The pig genotype and pedigree data can also be downloaded from:
Matthew A Cleveland, John M Hickey, Selma Forni, A Common Dataset for Genomic Analysis of Livestock Populations, G3 Genes|Genomes|Genetics, Volume 2, Issue 4, 1 April 2012, Pages 429–435, https://doi.org/10.1534/g3.111.001453
Run NN-MM in JWAS software.