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Pyomo.DoE: Correct A optimality #3803

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Merged
blnicho merged 53 commits into from
Feb 10, 2026
Merged

Pyomo.DoE: Correct A optimality #3803

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6a75654
changed the definition of A-optimality in `doe/utils.py`
smondal13 Nov 11, 2025
4ba1813
used the correct definition of A-optimilty in both utils.py and doe.py
smondal13 Nov 11, 2025
5c7462f
changed the label of the colorbar to trace(cov)
smondal13 Nov 11, 2025
e3d4833
Merge branch 'Pyomo:main' into change-a-optimality
smondal13 Dec 15, 2025
4a50d2a
Adds A-optimlaity objective and constraints with round off improvemen…
smondal13 Dec 15, 2025
b5a690b
Add roundoff correction constraint. Without initialization, the MM ex…
smondal13 Dec 15, 2025
106781b
Add initialization scheme for L_inv. After adding the initialization …
smondal13 Dec 16, 2025
91b0daf
Add trace_FIM in ``compute_FIM_full_factorial()` and change related `…
smondal13 Dec 16, 2025
682bf94
Update failing tests in and refactor the test with helper functions …
smondal13 Dec 16, 2025
efe4505
Reorder the helper functions' sequence and add comment for better und…
smondal13 Dec 16, 2025
31347a9
Raise `ValueError` in the edgecase when `objective_option = 'trace'` …
smondal13 Dec 16, 2025
78f0a78
Add pseudo A-optimality heatmap in the doe sensitivity plotting function
smondal13 Dec 17, 2025
241d52c
Apply suggestions from code review
smondal13 Dec 18, 2025
2eba303
Add both `trace_FIM (pseudo_A_optimality)` and `trace_cov(A-optimality)`
smondal13 Dec 18, 2025
51bd8c8
Merge branch 'parmest-consolidate-rooney-biegler' into change-a-optim…
smondal13 Dec 19, 2025
76baff0
Add `self.model is None` in `rooney_biegler.py` `get_labeled_model()`…
smondal13 Dec 19, 2025
cf2a7d2
Add A-optimality test
smondal13 Dec 19, 2025
50a81a6
Add tests for A-optimality in test_doe_build and test_doe_errors.py
smondal13 Dec 19, 2025
069aa50
Add test files for the objective trace and the draw_factorial plottin…
smondal13 Dec 19, 2025
f671418
Activate t``improve_cholesky_roundoff_error=True`` in the `rooney_bie…
smondal13 Dec 19, 2025
785a449
Add `attempt_import` for matplotlib in `test_doe_solve.py`
smondal13 Dec 19, 2025
a362b30
Merge branch 'main' into change-a-optimality
smondal13 Jan 9, 2026
d4dad65
Add tests for `rooney_biegler/doe_example.py`
smondal13 Jan 12, 2026
7371bed
Add corrected test for A-optimality
smondal13 Jan 12, 2026
c8d931c
Merge branch 'main' into change-a-optimality
smondal13 Jan 12, 2026
b1d980c
Add tests for doe plotting functionality
smondal13 Jan 13, 2026
3c430e9
Uncommented the fim_initial.
smondal13 Jan 13, 2026
705d83a
Add glob import at the beginning and removes inside function import o…
smondal13 Jan 13, 2026
4e11069
Merge branch 'main' into change-a-optimality
blnicho Jan 14, 2026
352bb71
Move and rename`parmest/examples/rooney_biegler/doe_example.py` to `d…
smondal13 Jan 20, 2026
9d1fece
Merge remote-tracking branch 'upstream/main' into change-a-optimality
smondal13 Jan 20, 2026
b9400a4
Add correct import statements for `rooney_biegler_doe_example`
smondal13 Jan 20, 2026
240aba6
Move test for`rooney_biegler_doe_example.py` to `test_doe_solve.py`
smondal13 Jan 20, 2026
f445503
Correct name of a test and remove local`matplotlib.use("Agg")` .
smondal13 Jan 20, 2026
0b9ce22
Address comments from `Alex` and `Bethany`. Add more tests, docstring…
smondal13 Jan 21, 2026
b086222
Merge branch 'main' into change-a-optimality
smondal13 Jan 21, 2026
d376b72
Merge branch 'main' into change-a-optimality
smondal13 Jan 21, 2026
bec7228
Add minor docstring formatting change
smondal13 Jan 22, 2026
16392d6
Merge branch 'change-a-optimality' of github.com:smondal13/pyomo into…
smondal13 Jan 22, 2026
91da06f
Merge branch 'main' into change-a-optimality
smondal13 Jan 22, 2026
b036d81
Correct `1D plotting function` y_label text
smondal13 Jan 23, 2026
9e036da
Correct y_label in 1D plotting function
smondal13 Jan 23, 2026
89b9da5
Remove `save_plots` argument from doe/reactor_exmple
smondal13 Jan 30, 2026
a7653b6
Refactor run_rooney_biegler_doe to use optimization_objective and sen…
smondal13 Jan 30, 2026
571780e
Merge branch 'main' into change-a-optimality
smondal13 Jan 30, 2026
a4e3834
Merge branch 'main' into change-a-optimality
smondal13 Feb 3, 2026
cae08e6
Merge branch 'main' into change-a-optimality
blnicho Feb 4, 2026
e84f21e
Merge branch 'main' into change-a-optimality
smondal13 Feb 4, 2026
4b57f03
Apply suggestions from code review
smondal13 Feb 9, 2026
cd0e16c
Remove plot container, add plot title and labels
smondal13 Feb 9, 2026
273a03e
resolve failing test issue
smondal13 Feb 9, 2026
a55045c
Set default value for design_range in doe example
blnicho Feb 9, 2026
a781312
Merge branch 'main' into change-a-optimality
blnicho Feb 9, 2026
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