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MANIFEST.in

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include db/model_kmer.csv
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include xpore/diffmod/model_kmer.csv

_README.md

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This file was deleted.

xpore/diffmod/configurator.py

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@@ -19,7 +19,7 @@ def get_paths(self):
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if 'model_kmer' in self.yaml['paths']:
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paths['model_kmer'] = os.path.abspath(self.yaml['paths']['model_kmer'])
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else:
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paths['model_kmer'] = '../../db/model_kmer.csv'
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paths['model_kmer'] = os.path.join(os.path.dirname(__file__),'model_kmer.csv')
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paths['out_dir'] = os.path.join(os.path.abspath(self.yaml['paths']['out_dir']), self.filename)
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paths.update(misc.makedirs(paths['out_dir'],sub_dirs=['models']))

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