update coolpuppy version #8
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - "*" | |
| jobs: | |
| docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Setup Sphinx environment | |
| run: | | |
| export PATH="/usr/share/miniconda/bin:$PATH" | |
| pip install -r docs/requirements.txt | |
| - name: Test doc generation | |
| run: | | |
| export PATH="/usr/share/miniconda/bin:$PATH" | |
| cd docs | |
| make html | |
| testing: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Setup mamba | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: snakemake | |
| channels: "conda-forge, bioconda" | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| - name: Setup Snakemake environment | |
| shell: bash -el {0} | |
| run: | | |
| conda config --set channel_priority strict | |
| mamba install -n snakemake -y snakemake-minimal pytest pandas | |
| - name: Fetch master | |
| if: github.ref != 'refs/heads/master' | |
| run: | | |
| git fetch origin master | |
| - name: Run tests | |
| shell: bash -el {0} | |
| env: | |
| DIFF_MASTER: ${{ github.event_name == 'pull_request' }} | |
| DIFF_LAST_COMMIT: ${{ github.ref == 'refs/heads/master' }} | |
| run: | | |
| # run tests | |
| pytest test.py -v |