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@ParkerLab

The Parker Lab at the University of Michigan

Popular repositories Loading

  1. ataqv ataqv Public

    A toolkit for QC and visualization of ATAC-seq results.

    C++ 67 10

  2. bioinf545 bioinf545 Public

    ATAC-seq lab for BIOINF545

    Shell 25 13

  3. atactk atactk Public

    A toolkit for working with ATAC-seq data.

    Python 24 4

  4. bioinf525 bioinf525 Public

    ATAC-seq lab for BIOINF525

    Shell 10 10

  5. BMO BMO Public

    BMO - a tool for predicting TF binding from ATAC-seq data

    R 9 1

  6. ATACseq-Snakemake ATACseq-Snakemake Public

    Forked from porchard/ATACseq-Snakemake

    Standard Parker Lab ATAC-seq processing pipeline in Snakemake form

    Python 6 1

Repositories

Showing 10 of 29 repositories
  • Nextflow 0 5 0 0 Updated Jan 9, 2025
  • ataqv Public

    A toolkit for QC and visualization of ATAC-seq results.

    C++ 67 GPL-3.0 10 4 0 Updated Jan 8, 2025
  • cta Public

    C++ implementation of Buenrostro adapter trimming

    C++ 2 5 2 1 Updated Oct 14, 2024
  • Python 0 3 0 0 Updated Aug 29, 2024
  • atactk Public

    A toolkit for working with ATAC-seq data.

    Python 24 GPL-3.0 4 2 0 Updated Jun 11, 2024
  • bioinf545 Public

    ATAC-seq lab for BIOINF545

    Shell 25 13 0 0 Updated Mar 12, 2024
  • sn_muscle_2023 Public

    Code for snATAC + snRNA analyses

    Python 0 0 0 0 Updated Nov 8, 2023
  • BMO Public

    BMO - a tool for predicting TF binding from ATAC-seq data

    R 9 GPL-3.0 1 1 0 Updated Jun 7, 2022
  • chromatin_information Public

    A companion repository to our chromatin information manuscript

    Python 2 1 0 0 Updated Mar 2, 2022
  • 2021_islet-rfx6 Public

    Code for Walker, Saunders, Rai et al., (2021).

    Roff 2 0 0 0 Updated Feb 2, 2022