Home

Welcome to the MSPC-Package wiki!

MSPC package development in R

This project is part of my master thesis, where handling bed format files which widely used in Bioinformatics field. As a developer of MSPC package, writing project log about all activity within one working days would be more appreciated and useful.

First things to remind me that, there are plenty way to manipulate bed files, so to be wisely come out proper solution to speed up whole project is going well.

for example, I have been considering that handling bedFiles are only can be done by reading them as GRanges objects, which were suggested by someone else, and it was just part of solution, not only solution. So remind self to be creatibe, more dynamic to think about all aspect of the problem.

so, reading bedFile as tabular data object such as data.frame could be more easier to understand and handle rest of components. Remember, be yourself and overcome my own shortage, think about the problem more dynamically.