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Metrics for CL #68

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Metrics for CL #68

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Commits on Aug 22, 2023

  1. rebase

    @Muedi
    Muedi committed Aug 22, 2023
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  2. Add function to get base sequences will remove again, but kept it for… 

    … own clarity
    @Muedi
    Muedi committed Aug 22, 2023
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  3. rebase

    @Muedi
    Muedi committed Aug 22, 2023
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  4. function to check and set cwd as base folder for eval script

    @Muedi
    Muedi committed Aug 22, 2023
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  5. runnable again

    @Muedi
    Muedi committed Aug 22, 2023
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Commits on Sep 7, 2023

  1. runs with esm pip package, so I removed the code again :) error stil… 

    …l thrown for multi mutants
    @Muedi
    Muedi committed Sep 7, 2023
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  2. Merge branch 'OpenBioML:main' into main

    @Muedi
    Muedi authored Sep 7, 2023
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  3. wt margins works (label_rows)

    @Muedi
    Muedi committed Sep 7, 2023
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Commits on Sep 11, 2023

  1. eval script, runs for ESM baseline, PR draft

    @Muedi
    Muedi committed Sep 11, 2023
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Commits on Sep 13, 2023

  1. add __init.py__ in getters folder

    @Muedi
    Muedi committed Sep 13, 2023
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  2. add AUTOREG variable, move train/test split to supervised block

    @Muedi
    Muedi committed Sep 13, 2023
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  3. APT zero-shot eval

    @Muedi
    Muedi committed Sep 13, 2023
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  4. small changes for vars

    @Muedi
    Muedi committed Sep 13, 2023
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Commits on Sep 15, 2023

  1. add cuda yaml and info on readme, Issue (OpenBioML#53)

    @Muedi
    Muedi committed Sep 15, 2023
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Commits on Sep 26, 2023

  1. break up eval script into multiple smaller ones

    @Muedi
    Muedi committed Sep 26, 2023
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  2. added esm and APT zero shot as to the comments in PR.

    @Muedi
    Muedi committed Sep 26, 2023
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  3. removed old eval script, added changes for Issues (OpenBioML#4) and (O… 

    …penBioML#53)
    @Muedi
    Muedi committed Sep 26, 2023
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Commits on Oct 12, 2023

  1. Merge branch 'OpenBioML:main' into main

    @Muedi
    Muedi authored Oct 12, 2023
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  2. combine folders in eval (OpenBioML#60)

    @Muedi
    Muedi committed Oct 12, 2023
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  3. update yml and gitignore

    @Muedi
    Muedi committed Oct 12, 2023
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  4. add rope config args to toy_hf

    @Muedi
    Muedi committed Oct 12, 2023
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Commits on Jan 30, 2024

  1. Merge branch 'OpenBioML:main' into main

    @Muedi
    Muedi authored Jan 30, 2024
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  2. Merge branch 'main' of github.com:Muedi/protein-lm-scaling

    @Muedi
    Muedi committed Jan 30, 2024
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Commits on Jan 31, 2024

  1. script for sequence complexity metrics

    @Muedi
    Muedi committed Jan 31, 2024
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Commits on Feb 19, 2024

  1. scripts to read a fasta and compute entropy and KLD

    @Muedi
    Muedi committed Feb 19, 2024
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  2. added amelies intrinsic dim stuff, need to add fasta support

    @Muedi
    Muedi committed Feb 19, 2024
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Commits on Mar 25, 2024

  1. typo in script name :D

    @Muedi
    Muedi committed Mar 25, 2024
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