Merge pull request #14 from leewujung/clean-post

Small updates before ms posting

README.md

@@ -4,7 +4,10 @@
 
 ## Purpose
 
-This repository illustrates the functionalities of [echopype](https://echopype.readthedocs.io/en/stable/), an open-source Python library that enables interoperability and scalability in water column sonar data analysis. The materials can be found within the [notebooks](https://github.com/OSOceanAcoustics/echopype-examples/tree/main/notebooks) folder in `.ipynb` files, which are [Jupyter notebooks](https://realpython.com/jupyter-notebook-introduction/). Open the [index.ipynb](https://github.com/OSOceanAcoustics/echopype-examples/blob/main/notebooks/index.ipynb) notebook to see an index of the existing example notebooks. To see the notebooks accurately rendered (GitHub notebook rendering has shortcomings), [open the index notebook in https://nbviewer.org](https://nbviewer.org/github/OSOceanAcoustics/echopype-examples/blob/main/notebooks/index.ipynb).
+This repository illustrates the functionalities of [echopype](https://echopype.readthedocs.io/en/stable/), an open-source Python library that enables interoperability and scalability of water column sonar data processing. 
+The materials can be found within the [notebooks](https://github.com/OSOceanAcoustics/echopype-examples/tree/main/notebooks) folder in `.ipynb` files, which are [Jupyter notebooks](https://realpython.com/jupyter-notebook-introduction/). 
+Open the [index.ipynb](https://github.com/OSOceanAcoustics/echopype-examples/blob/main/notebooks/index.ipynb) notebook to see an index of the existing example notebooks. 
+To see the notebooks accurately rendered (GitHub notebook rendering has shortcomings), [open the index notebook at https://nbviewer.org](https://nbviewer.org/github/OSOceanAcoustics/echopype-examples/blob/main/notebooks/index.ipynb).
 
 To actively explore and run the notebooks without downloading them or having to configure a Python environment locally, open them with https://mybinder.org:
 - Click on the "launch binder" badge above to launch a sandbox copy. The typical start time is about 3 minutes. 

binder/environment.yml

@@ -2,12 +2,13 @@ name: echopype
 channels:
   - conda-forge
 dependencies:
-  - python=3.8
+  - python=3.9
   - ipykernel
-  - hvplot
-  - holoviews=1.14.5
-  # - panel
-  - datashader
-  - cartopy
-  - geopandas=0.9.0
   - echopype=0.5.4
+  - aiobotocore
+  - geopandas
+  - cartopy
+  # -- holoviz --
+  - datashader
+  - holoviews
+  - hvplot

notebooks/index.ipynb

@@ -18,15 +18,25 @@
     "- [ms_PacificHake_EK60_cruisetracks.ipynb](ms_PacificHake_EK60_cruisetracks.ipynb). Exploring ship echosounder data from the Pacific Hake survey. Goals:\n",
     "    1. Illustrate a common workflow for echosounder data conversion, calibration and use.\n",
     "    2. Extract and visualize echosounder data (EK60) with relative ease using geospatial and temporal filters. \n",
+    "    \n",
+    "    \n",
     "- [ms_OOI_EK60_mooringtimeseries.ipynb](ms_OOI_EK60_mooringtimeseries.ipynb). Wacthing a solar eclipse using a moored echosounder. Goals:\n",
     "    1. Illustrate a common workflow for echosounder data conversion, calibration and use.\n",
     "    2. Demonstrate the ease to interoperate echosounder data (EK60) with those from a different instrument in a single computing environment. Without echopype, additional wrangling across more than one software systems is needed to achieve the same visualization and comparison."
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "b27998ce",
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -40,7 +50,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.7"
+   "version": "3.8.0"
   }
  },
  "nbformat": 4,