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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 911 457

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 229 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 277 139

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 60

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 189 90

Repositories

Showing 10 of 318 repositories
  • omock Public
    OHDSI/omock’s past year of commit activity
    R 2 Apache-2.0 1 4 0 Updated Jan 27, 2025
  • Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    OHDSI/Cyclops’s past year of commit activity
    C++ 39 33 19 1 Updated Jan 27, 2025
  • CohortConstructor Public
    OHDSI/CohortConstructor’s past year of commit activity
    R 1 Apache-2.0 0 40 3 Updated Jan 26, 2025
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 20 Apache-2.0 8 20 2 Updated Jan 25, 2025
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 15 Apache-2.0 15 0 1 Updated Jan 25, 2025
  • WhiteRabbit Public

    WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

    OHDSI/WhiteRabbit’s past year of commit activity
    Java 184 Apache-2.0 91 107 (3 issues need help) 5 Updated Jan 25, 2025
  • Strategus Public

    An R package for coordinating and executing analytics using HADES modules

    OHDSI/Strategus’s past year of commit activity
    R 6 11 16 5 Updated Jan 24, 2025
  • ClinicalCharacteristics Public

    [under development] table shell approach to OMOP characterization

    OHDSI/ClinicalCharacteristics’s past year of commit activity
    R 0 Apache-2.0 1 11 0 Updated Jan 24, 2025
  • OmopSketch Public
    OHDSI/OmopSketch’s past year of commit activity
    R 1 Apache-2.0 0 7 1 Updated Jan 24, 2025
  • DeepPatientLevelPrediction Public

    An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

    OHDSI/DeepPatientLevelPrediction’s past year of commit activity
    R 12 4 23 (2 issues need help) 2 Updated Jan 24, 2025
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