opencascade-occt: add optional vtk dependency by tnytown · Pull Request #433252 · NixOS/nixpkgs

tnytown · 2025-08-13T01:47:18Z

build123d (#433247) requires opencascade-occt built with vtk. These changes add an attribute for that dependency (withVtk). Additionally, I enabled C++ exceptions, as they are disabled by default for release builds and opencascade-occt's dependents in nixpkgs seem to require them.

CC @qbisi

Things done

Add a 👍 reaction to pull requests you find important.

qbisi · 2025-08-13T02:16:45Z

Thanks, I will take some time to build occtWithVtk and review this PR.
I am a bit confused about the final recipe for OCCT used in build123d.

When setting withVtk = true and enableException = true, occtWithVtk differs from the one defined in
https://github.com/NixOS/nixpkgs/blob/ff42ecd0607f402e0bc0e2e91d5958c3917661db/pkgs/development/python-modules/cadquery-ocp/default.nix#L50-L63
in that it uses a different VTK build with pythonSupport enabled.

tnytown · 2025-08-13T02:27:40Z

When setting withVtk = true and enableException = true, occtWithVtk differs from the one defined
in that it uses a different VTK build with pythonSupport enabled.

Hmm, is occtWithVtk relative to vtk-full or python3Packages.vtk somehow? vtk-full has mpiSupport = true, which might be the difference.

tnytown · 2025-08-13T11:57:47Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 433252
Commit: 8c82549513bf9cac60d818055f5ba5b630a6a32e

`x86_64-linux`

❌ 38 packages failed to build:

ants
intensity-normalization (python313Packages.intensity-normalization)
intensity-normalization.dist (python313Packages.intensity-normalization.dist)
mrtrix
python312Packages.intensity-normalization
python312Packages.intensity-normalization.dist
python312Packages.medpy
python312Packages.medpy.dist
python312Packages.medvol
python312Packages.medvol.dist
python312Packages.napari-nifti
python312Packages.napari-nifti.dist
python312Packages.pymedio
python312Packages.pymedio.dist
python312Packages.pyotb
python312Packages.pyotb.dist
python312Packages.pyradiomics
python312Packages.pyradiomics.dist
python312Packages.simpleitk
python312Packages.simpleitk.dist
python312Packages.torchio
python312Packages.torchio.dist
python313Packages.medpy
python313Packages.medpy.dist
python313Packages.medvol
python313Packages.medvol.dist
python313Packages.napari-nifti
python313Packages.napari-nifti.dist
python313Packages.pymedio
python313Packages.pymedio.dist
python313Packages.pyradiomics
python313Packages.pyradiomics.dist
python313Packages.simpleitk
python313Packages.simpleitk.dist
python313Packages.torchio
python313Packages.torchio.dist
rtabmap
simpleitk

✅ 164 packages built:

appcsxcad
c3d
cloudcompare
csxcad
elastix
elmerfem
exhibit
expliot
expliot.dist
ezminc
f3d
f3d.man
freecad
gdcm
itk (itk_5)
itk_5_2
libsForQt5.qcsxcad (plasma5Packages.qcsxcad)
libsForQt5.qcsxcad.dev (plasma5Packages.qcsxcad.dev)
mirtk
octavePackages.dicom
openems
otb
paraview
pcl
python312Packages.dcmstack
python312Packages.dcmstack.dist
python312Packages.deid
python312Packages.deid.dist
python312Packages.dicom-numpy
python312Packages.dicom-numpy.dist
python312Packages.dicom2nifti
python312Packages.dicom2nifti.dist
python312Packages.dicomweb-client
python312Packages.dicomweb-client.dist
python312Packages.dipy
python312Packages.dipy.dist
python312Packages.f3d
python312Packages.f3d.man
python312Packages.fast-simplification
python312Packages.fast-simplification.dist
python312Packages.fslpy
python312Packages.fslpy.dist
python312Packages.gdcm
python312Packages.gstools
python312Packages.gstools.dist
python312Packages.heudiconv
python312Packages.heudiconv.dist
python312Packages.highdicom
python312Packages.highdicom.dist
python312Packages.itk
python312Packages.mayavi
python312Packages.mayavi.dist
python312Packages.nibabel
python312Packages.nibabel.dist
python312Packages.nilearn
python312Packages.nilearn.dist
python312Packages.nipy
python312Packages.nipy.dist
python312Packages.nipype
python312Packages.nipype.dist
python312Packages.nitime
python312Packages.nitime.dist
python312Packages.nitransforms
python312Packages.nitransforms.dist
python312Packages.niworkflows
python312Packages.niworkflows.dist
python312Packages.pybids
python312Packages.pybids.dist
python312Packages.pydicom
python312Packages.pydicom.dist
python312Packages.pykrige
python312Packages.pykrige.dist
python312Packages.pylibjpeg
python312Packages.pylibjpeg-openjpeg
python312Packages.pylibjpeg-openjpeg.dist
python312Packages.pylibjpeg.dist
python312Packages.pymatgen
python312Packages.pymatgen.dist
python312Packages.pynetdicom
python312Packages.pynetdicom.dist
python312Packages.pyorthanc
python312Packages.pyorthanc.dist
python312Packages.python-csxcad
python312Packages.python-csxcad.dist
python312Packages.python-openems
python312Packages.python-openems.dist
python312Packages.pyvista
python312Packages.pyvista.dist
python312Packages.sfepy
python312Packages.sfepy.dist
python312Packages.sumo
python312Packages.sumo.dist
python312Packages.templateflow
python312Packages.templateflow.dist
python312Packages.trx-python
python312Packages.trx-python.dist
python312Packages.vtk
python312Packages.xnatpy
python312Packages.xnatpy.dist
python313Packages.dcmstack
python313Packages.dcmstack.dist
python313Packages.deid
python313Packages.deid.dist
python313Packages.dicom-numpy
python313Packages.dicom-numpy.dist
python313Packages.dicom2nifti
python313Packages.dicom2nifti.dist
python313Packages.dicomweb-client
python313Packages.dicomweb-client.dist
python313Packages.dipy
python313Packages.dipy.dist
python313Packages.f3d
python313Packages.f3d.man
python313Packages.fast-simplification
python313Packages.fast-simplification.dist
python313Packages.fslpy
python313Packages.fslpy.dist
python313Packages.gdcm
python313Packages.gstools
python313Packages.gstools.dist
python313Packages.highdicom
python313Packages.highdicom.dist
python313Packages.itk
python313Packages.nibabel
python313Packages.nibabel.dist
python313Packages.nilearn
python313Packages.nilearn.dist
python313Packages.nipy
python313Packages.nipy.dist
python313Packages.nitime
python313Packages.nitime.dist
python313Packages.nitransforms
python313Packages.nitransforms.dist
python313Packages.pybids
python313Packages.pybids.dist
python313Packages.pydicom
python313Packages.pydicom.dist
python313Packages.pykrige
python313Packages.pykrige.dist
python313Packages.pylibjpeg
python313Packages.pylibjpeg-openjpeg
python313Packages.pylibjpeg-openjpeg.dist
python313Packages.pylibjpeg.dist
python313Packages.pynetdicom
python313Packages.pynetdicom.dist
python313Packages.pyorthanc
python313Packages.pyorthanc.dist
python313Packages.pyotb
python313Packages.pyotb.dist
python313Packages.python-csxcad
python313Packages.python-csxcad.dist
python313Packages.pyvista
python313Packages.pyvista.dist
python313Packages.templateflow
python313Packages.templateflow.dist
python313Packages.trx-python
python313Packages.trx-python.dist
vtk-full (python313Packages.vtk)
python313Packages.xnatpy
python313Packages.xnatpy.dist
therion
vtk (vtk_9_5)
vtkWithQt5
vtkWithQt6

Error logs: `x86_64-linux`

ants

warning: Skipping impure flag -mtune=native because NIX_ENFORCE_NO_NATIVE is set
warning: Skipping impure flag -mtune=native because NIX_ENFORCE_NO_NATIVE is set
warning: Skipping impure flag -mtune=native because NIX_ENFORCE_NO_NATIVE is set
warning: Skipping impure flag -mtune=native because NIX_ENFORCE_NO_NATIVE is set
warning: Skipping impure flag -mtune=native because NIX_ENFORCE_NO_NATIVE is set
warning: Skipping impure flag -mtune=native because NIX_ENFORCE_NO_NATIVE is set
In file included from /build/source/Examples/ImageMathHelper3D.cxx:1:
/build/source/Examples/ImageMath_Templates.hxx: In function 'int ants::ReplicateDisplacement(int, char**) [with unsigned int ImageDimension = 3]':
/build/source/Examples/ImageMath_Templates.hxx:10554:40: warning: 'vec.itk::Vector::itk::FixedArray.itk::FixedArray::m_InternalArray[3]' may be used uninitialized [8;;https://gcc.gnu.org/onlinedocs/gcc-14.3.0/gcc/Warning-Options.html#index-Wmaybe-uninitialized�-Wmaybe-uninitialized8;;�]
10554 |   typename VectorRImageType::PixelType vec;
      |                                        ^~~
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make[2]: *** [Examples/CMakeFiles/antsUtilities.dir/build.make:261: Examples/CMakeFiles/antsUtilities.dir/ImageMathHelper3D.cxx.o] Error 1
make[2]: *** Waiting for unfinished jobs....
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make[2]: *** [Examples/CMakeFiles/antsUtilities.dir/build.make:149: Examples/CMakeFiles/antsUtilities.dir/antsRegistration3DFloat.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:730: Examples/CMakeFiles/antsUtilities.dir/all] Error 2
make: *** [Makefile:166: all] Error 2

qbisi

We should add an variant of opencascade-occt built with vtk support in all-packages.nix that can be used by build123d.
Maybe occtWithVtk？ not sure if it is good compared with opencascade-occtWithVtk or other form.

pkgs/by-name/op/opencascade-occt/package.nix

tnytown · 2025-08-14T02:47:13Z

We should add an variant of opencascade-occt built with vtk support in all-packages.nix that can be used by build123d. Maybe occtWithVtk？ not sure if it is good compared with opencascade-occtWithVtk or other form.

I agree! I think I would prefer opencascade-occtWithVtk if only for the reason that it'll be grouped with the other opencascade packages.

tnytown · 2025-08-14T04:05:12Z

Hmm, just tried to add opencascade-occtWithVtk and I'm realizing that build123d needs a special vtk for opencascade-occt that doesn't really make sense to put in opencascade-occtWithVtk; namely:

https://github.com/NixOS/nixpkgs/blob/7f6a6a7f8834163ddbf363525d745c45ec57f49d/pkgs/development/python-modules/cadquery-ocp/default.nix#L53-L56

WDYT about having pythonSupport = true and mpiSupport = false here? IMO it doesn't make much sense but since build123d is going to be the only consumer maybe it can be justified?

qbisi · 2025-08-14T05:16:44Z

If both python3Packages.vtk and vtk are available, we are refering to python3Packages.vtk first when using inputs vtk in python3Packages scope. What we really need in cadquery-ocp is the vanilla pkgs.vtk that dont have mpiSupport/pythonSupport/qtSupport.

By adding a variant of opencascade-occtWithVtk in all-packages.nix we can use opencascade-occtWithVtk in cadquery-ocp directly and avoid using vtkWithoutMPI.

Also, adding variant opencascade-occtWithVtk makes this standalone pull request complete and we can check we do build opencascade-occtWithVtk by ofborg ci or running nixpkgs-review.

tnytown · 2025-08-14T05:24:40Z

If both python3Packages.vtk and vtk are available, we are refering to python3Packages.vtk first when using inputs vtk in python3Packages scope. What we really need in cadquery-ocp is the vanilla pkgs.vtk that dont have mpiSupport/pythonSupport/qtSupport.

By adding a variant of opencascade-occtWithVtk in all-packages.nix we can use opencascade-occtWithVtk in cadquery-ocp directly and avoid using vtkWithoutMPI.

Also, adding variant opencascade-occtWithVtk makes this standalone pull request complete and we can check we do build opencascade-occtWithVtk by ofborg ci or running nixpkgs-review.

Yes, but unless I'm missing something we need pythonSupport for vtk in cadquery-ocp? build123d depends on a vtk with pythonSupport. Unless we use different vtk derivations between build123d and cadquery-ocp?

pkgs/by-name/op/opencascade-occt/package.nix

qbisi · 2025-08-14T05:31:33Z

I will check if cadquery-ocp do needs vtk with pythonSupport/ without mpiSupport.

pkgs/by-name/op/opencascade-occt/package.nix

qbisi · 2025-08-15T00:56:49Z

build123d depends on a vtk with pythonSupport

Yes, cadquery require vtk with pythonSupport and without mpiSupport.
I have opened a pr to switch the configuration of python3Packages.vtk
#433853

tnytown · 2025-08-15T04:22:37Z

To clarify, is the plan to use python3Packages.vtk in opencascade-occtWithVtk? Or are we going with vanilla pkgs.vtk in opencascade-occtWithVtk and using python3Packages.vtk in cadquery-ocp, which itself would depend on pkgs.vtk indirectly through opencascade-occtWithVtk? Sorry for the dumb questions, just generally unsure about nixpkgs conventions when it comes to multiple variants of dependencies in the same closure.

tnytown · 2025-08-16T15:29:37Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 433252
Commit: c8515e7e65e210f7655bade730d23fda9e55bd01

`x86_64-linux`

⏩ 2 packages marked as broken and skipped:

bambu-studio
bambu-studio.debug

✅ 269 packages built:

ants
appcsxcad
c3d
cloudcompare
csxcad
dune3d
elastix
elmerfem
exhibit
expliot
expliot.dist
ezminc
f3d
f3d.man
freecad
gdcm
gmsh
haskellPackages.opencascade-hs
haskellPackages.opencascade-hs.doc
haskellPackages.waterfall-cad
haskellPackages.waterfall-cad-examples
haskellPackages.waterfall-cad-examples.doc
haskellPackages.waterfall-cad-svg
haskellPackages.waterfall-cad-svg.doc
haskellPackages.waterfall-cad.doc
horizon-eda
inkcut
inkcut.dist
inkscape-extensions.inkcut
intensity-normalization (python313Packages.intensity-normalization)
intensity-normalization.dist (python313Packages.intensity-normalization.dist)
interactive-html-bom
interactive-html-bom.dist
itk (itk_5)
itk_5_2
kicad
kicad-small
kicad-testing
kicad-testing-small
kicad-unstable
kicad-unstable-small
kicadAddons.kikit
kicadAddons.kikit-library
kikit
kikit.dist
librepcb
libsForQt5.qcsxcad (plasma5Packages.qcsxcad)
libsForQt5.qcsxcad.dev (plasma5Packages.qcsxcad.dev)
mirtk
mrtrix
netgen (python313Packages.netgen-mesher)
octavePackages.bim
octavePackages.dicom
octavePackages.msh
opencascade-occt
opencascade-occt_7_6
opencascade-occt_7_6_1
openems
orca-slicer
orca-slicer.debug
otb
paraview
pcl
prusa-slicer
prusa-slicer.debug
python312Packages.dcmstack
python312Packages.dcmstack.dist
python312Packages.deid
python312Packages.deid.dist
python312Packages.dicom-numpy
python312Packages.dicom-numpy.dist
python312Packages.dicom2nifti
python312Packages.dicom2nifti.dist
python312Packages.dicomweb-client
python312Packages.dicomweb-client.dist
python312Packages.dipy
python312Packages.dipy.dist
python312Packages.enamlx
python312Packages.enamlx.dist
python312Packages.f3d
python312Packages.f3d.man
python312Packages.fast-simplification
python312Packages.fast-simplification.dist
python312Packages.fslpy
python312Packages.fslpy.dist
python312Packages.gdcm
python312Packages.gmsh
python312Packages.gstools
python312Packages.gstools.dist
python312Packages.heudiconv
python312Packages.heudiconv.dist
python312Packages.highdicom
python312Packages.highdicom.dist
python312Packages.horizon-eda
python312Packages.ifcopenshell
python312Packages.intensity-normalization
python312Packages.intensity-normalization.dist
python312Packages.itk
python312Packages.kicad
python312Packages.kicadcliwrapper
python312Packages.kicadcliwrapper.dist
python312Packages.mayavi
python312Packages.mayavi.dist
python312Packages.medpy
python312Packages.medpy.dist
python312Packages.medvol
python312Packages.medvol.dist
python312Packages.napari-nifti
python312Packages.napari-nifti.dist
python312Packages.netgen-mesher
python312Packages.nibabel
python312Packages.nibabel.dist
python312Packages.nilearn
python312Packages.nilearn.dist
python312Packages.nipy
python312Packages.nipy.dist
python312Packages.nipype
python312Packages.nipype.dist
python312Packages.nitime
python312Packages.nitime.dist
python312Packages.nitransforms
python312Packages.nitransforms.dist
python312Packages.niworkflows
python312Packages.niworkflows.dist
python312Packages.pcbnewtransition
python312Packages.pcbnewtransition.dist
python312Packages.pybids
python312Packages.pybids.dist
python312Packages.pydicom
python312Packages.pydicom.dist
python312Packages.pykrige
python312Packages.pykrige.dist
python312Packages.pylibjpeg
python312Packages.pylibjpeg-openjpeg
python312Packages.pylibjpeg-openjpeg.dist
python312Packages.pylibjpeg.dist
python312Packages.pymatgen
python312Packages.pymatgen.dist
python312Packages.pymedio
python312Packages.pymedio.dist
python312Packages.pynetdicom
python312Packages.pynetdicom.dist
python312Packages.pyorthanc
python312Packages.pyorthanc.dist
python312Packages.pyotb
python312Packages.pyotb.dist
python312Packages.pyradiomics
python312Packages.pyradiomics.dist
python312Packages.python-csxcad
python312Packages.python-csxcad.dist
python312Packages.python-openems
python312Packages.python-openems.dist
python312Packages.pythonocc-core
python312Packages.pyvista
python312Packages.pyvista.dist
python312Packages.sfepy
python312Packages.sfepy.dist
python312Packages.simpleitk
python312Packages.simpleitk.dist
python312Packages.sumo
python312Packages.sumo.dist
python312Packages.templateflow
python312Packages.templateflow.dist
python312Packages.torchio
python312Packages.torchio.dist
python312Packages.trx-python
python312Packages.trx-python.dist
python312Packages.vtk
python312Packages.xnatpy
python312Packages.xnatpy.dist
python313Packages.atopile
python313Packages.atopile.dist
python313Packages.dcmstack
python313Packages.dcmstack.dist
python313Packages.deid
python313Packages.deid.dist
python313Packages.dicom-numpy
python313Packages.dicom-numpy.dist
python313Packages.dicom2nifti
python313Packages.dicom2nifti.dist
python313Packages.dicomweb-client
python313Packages.dicomweb-client.dist
python313Packages.dipy
python313Packages.dipy.dist
python313Packages.enamlx
python313Packages.enamlx.dist
python313Packages.f3d
python313Packages.f3d.man
python313Packages.fast-simplification
python313Packages.fast-simplification.dist
python313Packages.fslpy
python313Packages.fslpy.dist
python313Packages.gdcm
python313Packages.gmsh
python313Packages.gstools
python313Packages.gstools.dist
python313Packages.highdicom
python313Packages.highdicom.dist
python313Packages.horizon-eda
python313Packages.ifcopenshell
python313Packages.itk
python313Packages.kicad
python313Packages.kicadcliwrapper
python313Packages.kicadcliwrapper.dist
python313Packages.medpy
python313Packages.medpy.dist
python313Packages.medvol
python313Packages.medvol.dist
python313Packages.napari-nifti
python313Packages.napari-nifti.dist
python313Packages.nibabel
python313Packages.nibabel.dist
python313Packages.nilearn
python313Packages.nilearn.dist
python313Packages.nipy
python313Packages.nipy.dist
python313Packages.nitime
python313Packages.nitime.dist
python313Packages.nitransforms
python313Packages.nitransforms.dist
python313Packages.pcbnewtransition
python313Packages.pcbnewtransition.dist
python313Packages.pybids
python313Packages.pybids.dist
python313Packages.pydicom
python313Packages.pydicom.dist
python313Packages.pykrige
python313Packages.pykrige.dist
python313Packages.pylibjpeg
python313Packages.pylibjpeg-openjpeg
python313Packages.pylibjpeg-openjpeg.dist
python313Packages.pylibjpeg.dist
python313Packages.pymedio
python313Packages.pymedio.dist
python313Packages.pynetdicom
python313Packages.pynetdicom.dist
python313Packages.pyorthanc
python313Packages.pyorthanc.dist
python313Packages.pyotb
python313Packages.pyotb.dist
python313Packages.pyradiomics
python313Packages.pyradiomics.dist
python313Packages.python-csxcad
python313Packages.python-csxcad.dist
python313Packages.pythonocc-core
python313Packages.pyvista
python313Packages.pyvista.dist
python313Packages.simpleitk
python313Packages.simpleitk.dist
python313Packages.templateflow
python313Packages.templateflow.dist
python313Packages.torchio
python313Packages.torchio.dist
python313Packages.trx-python
python313Packages.trx-python.dist
python313Packages.vtk
python313Packages.xnatpy
python313Packages.xnatpy.dist
rtabmap
simpleitk
super-slicer (super-slicer-latest)
super-slicer-beta
super-slicer-beta.debug
super-slicer.debug (super-slicer-latest.debug)
therion
vtk (vtk_9_5)
vtk-full
vtkWithQt5
vtkWithQt6

pkgs/by-name/op/opencascade-occt/package.nix

qbisi · 2025-09-03T05:02:00Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 433252
Commit: 205d89f72385833f9b4312babbdac9b8b4fd0a31

`aarch64-darwin`

❌ 8 packages failed to build:

python312Packages.gstools
python312Packages.gstools.dist
python312Packages.pykrige
python312Packages.pykrige.dist
python313Packages.gstools
python313Packages.gstools.dist
python313Packages.pykrige
python313Packages.pykrige.dist

✅ 63 packages built:

ants
dune3d
elmerfem
f3d
gdcm
gmsh
haskellPackages.opencascade-hs
haskellPackages.opencascade-hs.doc
haskellPackages.waterfall-cad
haskellPackages.waterfall-cad-examples
haskellPackages.waterfall-cad-examples.doc
haskellPackages.waterfall-cad-svg
haskellPackages.waterfall-cad-svg.doc
haskellPackages.waterfall-cad.doc
inkcut
inkcut.dist
inkscape-extensions.inkcut
itk (itk_5)
itk_5_2
netgen (python313Packages.netgen-mesher)
octavePackages.bim
octavePackages.dicom
octavePackages.msh
opencascade-occt
opencascade-occt_7_6
opencascade-occt_7_6_1
paraview
pcl
python312Packages.enamlx
python312Packages.enamlx.dist
python312Packages.f3d
python312Packages.fast-simplification
python312Packages.fast-simplification.dist
python312Packages.gdcm
python312Packages.gmsh
python312Packages.mayavi
python312Packages.mayavi.dist
python312Packages.netgen-mesher
python312Packages.pymatgen
python312Packages.pymatgen.dist
python312Packages.pythonocc-core
python312Packages.pyvista
python312Packages.pyvista.dist
python312Packages.sfepy
python312Packages.sfepy.dist
python312Packages.sumo
python312Packages.sumo.dist
python312Packages.vtk
python313Packages.enamlx
python313Packages.enamlx.dist
python313Packages.f3d
python313Packages.fast-simplification
python313Packages.fast-simplification.dist
python313Packages.gdcm
python313Packages.gmsh
python313Packages.pythonocc-core
python313Packages.pyvista
python313Packages.pyvista.dist
python313Packages.vtk
vtk (vtk_9_5)
vtk-full
vtkWithQt5
vtkWithQt6

nixos-discourse · 2025-09-03T15:26:23Z

This pull request has been mentioned on NixOS Discourse. There might be relevant details there:

https://discourse.nixos.org/t/prs-ready-for-review/3032/5832

qbisi · 2025-09-03T19:03:36Z

python3Packages.{gstools,pykrige} are known broken on aarch64-darwin.
@tnytown can you run nixpkgs-review on x86_64-linux again.

qbisi · 2025-09-04T12:04:09Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 433252
Commit: 205d89f72385833f9b4312babbdac9b8b4fd0a31

`x86_64-linux`

❌ 24 packages failed to build:

expliot
expliot.dist
python312Packages.dipy
python312Packages.dipy.dist
python312Packages.gstools
python312Packages.gstools.dist
python312Packages.nilearn
python312Packages.nilearn.dist
python312Packages.niworkflows
python312Packages.niworkflows.dist
python312Packages.pykrige
python312Packages.pykrige.dist
python313Packages.atopile
python313Packages.atopile.dist
python313Packages.dipy
python313Packages.dipy.dist
python313Packages.gstools
python313Packages.gstools.dist
python313Packages.nilearn
python313Packages.nilearn.dist
python313Packages.niworkflows
python313Packages.niworkflows.dist
python313Packages.pykrige
python313Packages.pykrige.dist

✅ 253 packages built:

ants
appcsxcad
bambu-studio
bambu-studio.debug
c3d
cloudcompare
csxcad
dune3d
elastix
elmerfem
exhibit
ezminc
f3d
f3d.man
freecad
gdcm
gmsh
haskellPackages.opencascade-hs
haskellPackages.opencascade-hs.doc
haskellPackages.waterfall-cad
haskellPackages.waterfall-cad-examples
haskellPackages.waterfall-cad-examples.doc
haskellPackages.waterfall-cad-svg
haskellPackages.waterfall-cad-svg.doc
haskellPackages.waterfall-cad.doc
horizon-eda
inkcut
inkcut.dist
inkscape-extensions.inkcut
intensity-normalization (python313Packages.intensity-normalization)
intensity-normalization.dist (python313Packages.intensity-normalization.dist)
interactive-html-bom
interactive-html-bom.dist
itk (itk_5)
itk_5_2
kicad
kicad-small
kicad-testing
kicad-testing-small
kicad-unstable
kicad-unstable-small
kicadAddons.kikit
kicadAddons.kikit-library
kikit
kikit.dist
librepcb
libsForQt5.qcsxcad (plasma5Packages.qcsxcad)
libsForQt5.qcsxcad.dev (plasma5Packages.qcsxcad.dev)
mirtk
mrtrix
netgen (python313Packages.netgen-mesher)
octavePackages.bim
octavePackages.dicom
octavePackages.msh
opencascade-occt
opencascade-occt_7_6
opencascade-occt_7_6_1
openems
orca-slicer
orca-slicer.debug
otb
paraview
pcl
prusa-slicer
prusa-slicer.debug
python312Packages.dcmstack
python312Packages.dcmstack.dist
python312Packages.deid
python312Packages.deid.dist
python312Packages.dicom-numpy
python312Packages.dicom-numpy.dist
python312Packages.dicom2nifti
python312Packages.dicom2nifti.dist
python312Packages.dicomweb-client
python312Packages.dicomweb-client.dist
python312Packages.enamlx
python312Packages.enamlx.dist
python312Packages.f3d
python312Packages.f3d.man
python312Packages.fast-simplification
python312Packages.fast-simplification.dist
python312Packages.fslpy
python312Packages.fslpy.dist
python312Packages.gdcm
python312Packages.gmsh
python312Packages.heudiconv
python312Packages.heudiconv.dist
python312Packages.highdicom
python312Packages.highdicom.dist
python312Packages.horizon-eda
python312Packages.ifcopenshell
python312Packages.intensity-normalization
python312Packages.intensity-normalization.dist
python312Packages.itk
python312Packages.kicad
python312Packages.kicadcliwrapper
python312Packages.kicadcliwrapper.dist
python312Packages.mayavi
python312Packages.mayavi.dist
python312Packages.medpy
python312Packages.medpy.dist
python312Packages.medvol
python312Packages.medvol.dist
python312Packages.napari-nifti
python312Packages.napari-nifti.dist
python312Packages.netgen-mesher
python312Packages.nibabel
python312Packages.nibabel.dist
python312Packages.nipy
python312Packages.nipy.dist
python312Packages.nipype
python312Packages.nipype.dist
python312Packages.nitime
python312Packages.nitime.dist
python312Packages.nitransforms
python312Packages.nitransforms.dist
python312Packages.pcbnewtransition
python312Packages.pcbnewtransition.dist
python312Packages.pybids
python312Packages.pybids.dist
python312Packages.pydicom
python312Packages.pydicom.dist
python312Packages.pylibjpeg
python312Packages.pylibjpeg-openjpeg
python312Packages.pylibjpeg-openjpeg.dist
python312Packages.pylibjpeg.dist
python312Packages.pymatgen
python312Packages.pymatgen.dist
python312Packages.pymedio
python312Packages.pymedio.dist
python312Packages.pynetdicom
python312Packages.pynetdicom.dist
python312Packages.pyorthanc
python312Packages.pyorthanc.dist
python312Packages.pyotb
python312Packages.pyotb.dist
python312Packages.pyradiomics
python312Packages.pyradiomics.dist
python312Packages.python-csxcad
python312Packages.python-csxcad.dist
python312Packages.python-openems
python312Packages.python-openems.dist
python312Packages.pythonocc-core
python312Packages.pyvista
python312Packages.pyvista.dist
python312Packages.sfepy
python312Packages.sfepy.dist
python312Packages.simpleitk
python312Packages.simpleitk.dist
python312Packages.sumo
python312Packages.sumo.dist
python312Packages.templateflow
python312Packages.templateflow.dist
python312Packages.torchio
python312Packages.torchio.dist
python312Packages.trx-python
python312Packages.trx-python.dist
python312Packages.vtk
python312Packages.xnatpy
python312Packages.xnatpy.dist
python313Packages.dcmstack
python313Packages.dcmstack.dist
python313Packages.deid
python313Packages.deid.dist
python313Packages.dicom-numpy
python313Packages.dicom-numpy.dist
python313Packages.dicom2nifti
python313Packages.dicom2nifti.dist
python313Packages.dicomweb-client
python313Packages.dicomweb-client.dist
python313Packages.enamlx
python313Packages.enamlx.dist
python313Packages.f3d
python313Packages.f3d.man
python313Packages.fast-simplification
python313Packages.fast-simplification.dist
python313Packages.fslpy
python313Packages.fslpy.dist
python313Packages.gdcm
python313Packages.gmsh
python313Packages.heudiconv
python313Packages.heudiconv.dist
python313Packages.highdicom
python313Packages.highdicom.dist
python313Packages.horizon-eda
python313Packages.ifcopenshell
python313Packages.itk
python313Packages.kicad
python313Packages.kicadcliwrapper
python313Packages.kicadcliwrapper.dist
python313Packages.medpy
python313Packages.medpy.dist
python313Packages.medvol
python313Packages.medvol.dist
python313Packages.napari-nifti
python313Packages.napari-nifti.dist
python313Packages.nibabel
python313Packages.nibabel.dist
python313Packages.nipy
python313Packages.nipy.dist
python313Packages.nipype
python313Packages.nipype.dist
python313Packages.nitime
python313Packages.nitime.dist
python313Packages.nitransforms
python313Packages.nitransforms.dist
python313Packages.pcbnewtransition
python313Packages.pcbnewtransition.dist
python313Packages.pybids
python313Packages.pybids.dist
python313Packages.pydicom
python313Packages.pydicom.dist
python313Packages.pylibjpeg
python313Packages.pylibjpeg-openjpeg
python313Packages.pylibjpeg-openjpeg.dist
python313Packages.pylibjpeg.dist
python313Packages.pymedio
python313Packages.pymedio.dist
python313Packages.pynetdicom
python313Packages.pynetdicom.dist
python313Packages.pyorthanc
python313Packages.pyorthanc.dist
python313Packages.pyotb
python313Packages.pyotb.dist
python313Packages.pyradiomics
python313Packages.pyradiomics.dist
python313Packages.python-csxcad
python313Packages.python-csxcad.dist
python313Packages.pythonocc-core
python313Packages.pyvista
python313Packages.pyvista.dist
python313Packages.simpleitk
python313Packages.simpleitk.dist
python313Packages.templateflow
python313Packages.templateflow.dist
python313Packages.torchio
python313Packages.torchio.dist
python313Packages.trx-python
python313Packages.trx-python.dist
python313Packages.vtk
python313Packages.xnatpy
python313Packages.xnatpy.dist
rtabmap
simpleitk
super-slicer (super-slicer-latest)
super-slicer-beta
super-slicer-beta.debug
super-slicer.debug (super-slicer-latest.debug)
therion
vtk (vtk_9_5)
vtk-full
vtkWithQt5
vtkWithQt6

Error logs: `x86_64-linux`

python312Packages.dipy

[30/123] Generating 'dipy/reconst/quick_squash.cpython-312-x86_64-linux-gnu.so.p/quick_squash.c' [31/123] Generating 'dipy/reconst/eudx_direction_getter.cpython-312-x86_64-linux-gnu.so.p/eudx_direction_getter.c' [32/123] Generating 'dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/pca_noise_estimate.c' [33/123] Generating 'dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/ptt_direction_getter.c' [34/123] Generating 'dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/pmf.c' [35/123] Generating 'dipy/segment/metricspeed.cpython-312-x86_64-linux-gnu.so.p/metricspeed.c' [36/123] Generating 'dipy/tracking/stopping_criterion.cpython-312-x86_64-linux-gnu.so.p/stopping_criterion.c' [37/123] Generating 'dipy/reconst/recspeed.cpython-312-x86_64-linux-gnu.so.p/recspeed.c' [38/123] Generating 'dipy/segment/featurespeed.cpython-312-x86_64-linux-gnu.so.p/featurespeed.c' [39/123] Compiling C object dipy/utils/omp.cpython-312-x86_64-linux-gnu.so.p/meson-generated_omp.c.o [40/123] Generating 'dipy/segment/clusteringspeed.cpython-312-x86_64-linux-gnu.so.p/clusteringspeed.c' [41/123] Generating 'dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/crosscorr.c' [42/123] Generating 'dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/parzenhist.c' [43/123] Generating 'dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/expectmax.c' [44/123] Generating 'dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/sumsqdiff.c' [45/123] Generating 'dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/interpolation.c' [46/123] Generating 'dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/vector_fields.c' ninja: build stopped: subcommand failed.

ERROR Backend subprocess exited when trying to invoke build_wheel

python312Packages.nilearn

Finished executing pythonRemoveTestsDir
Running phase: installCheckPhase
@nix { "action": "setPhase", "phase": "installCheckPhase" }
no Makefile or custom installCheckPhase, doing nothing
Running phase: pythonCatchConflictsPhase
@nix { "action": "setPhase", "phase": "pythonCatchConflictsPhase" }
Running phase: pythonRemoveBinBytecodePhase
@nix { "action": "setPhase", "phase": "pythonRemoveBinBytecodePhase" }
Running phase: pythonImportsCheckPhase
@nix { "action": "setPhase", "phase": "pythonImportsCheckPhase" }
Executing pythonImportsCheckPhase
Running phase: pytestCheckPhase
@nix { "action": "setPhase", "phase": "pytestCheckPhase" }
Executing pytestCheckPhase
pytest flags: -m pytest nilearn/connectome/tests -k not\ \(test_clean_confounds\)\ and\ not\ \(test_check_estimator_invalid_group_sparse_covariance\)
ERROR: usage: __main__.py [options] [file_or_dir] [file_or_dir] [...]
__main__.py: error: unrecognized arguments: --timeout=45
  inifile: /build/source/pyproject.toml
  rootdir: /build/source

python313Packages.dipy

[34/123] Generating 'dipy/align/transforms.cpython-313-x86_64-linux-gnu.so.p/transforms.c' [35/123] Generating 'dipy/tracking/stopping_criterion.cpython-313-x86_64-linux-gnu.so.p/stopping_criterion.c' [36/123] Generating 'dipy/direction/closest_peak_direction_getter.cpython-313-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c' [37/123] Generating 'dipy/core/interpolation.cpython-313-x86_64-linux-gnu.so.p/interpolation.c' [38/123] Generating 'dipy/segment/clusteringspeed.cpython-313-x86_64-linux-gnu.so.p/clusteringspeed.c' [39/123] Generating 'dipy/segment/featurespeed.cpython-313-x86_64-linux-gnu.so.p/featurespeed.c' [40/123] Generating 'dipy/direction/ptt_direction_getter.cpython-313-x86_64-linux-gnu.so.p/ptt_direction_getter.c' [41/123] Generating 'dipy/segment/metricspeed.cpython-313-x86_64-linux-gnu.so.p/metricspeed.c' [42/123] Generating 'dipy/align/parzenhist.cpython-313-x86_64-linux-gnu.so.p/parzenhist.c' [43/123] Generating 'dipy/align/sumsqdiff.cpython-313-x86_64-linux-gnu.so.p/sumsqdiff.c' [44/123] Compiling C object dipy/utils/fast_numpy.cpython-313-x86_64-linux-gnu.so.p/meson-generated_fast_numpy.c.o [45/123] Compiling C object dipy/utils/omp.cpython-313-x86_64-linux-gnu.so.p/meson-generated_omp.c.o [46/123] Generating 'dipy/align/crosscorr.cpython-313-x86_64-linux-gnu.so.p/crosscorr.c' [47/123] Generating 'dipy/align/vector_fields.cpython-313-x86_64-linux-gnu.so.p/vector_fields.c' [48/123] Compiling C object dipy/tracking/direction_getter.cpython-313-x86_64-linux-gnu.so.p/meson-generated_direction_getter.c.o [49/123] Compiling C object dipy/denoise/nlmeans_block.cpython-313-x86_64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o [50/123] Compiling C object dipy/denoise/pca_noise_estimate.cpython-313-x86_64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o ninja: build stopped: subcommand failed.

ERROR Backend subprocess exited when trying to invoke build_wheel

qbisi · 2025-09-04T12:17:50Z

These pythonPackages are all known failed on hydra since last bulk python upgrade.

tnytown · 2025-09-04T15:32:36Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 433252
Commit: 205d89f72385833f9b4312babbdac9b8b4fd0a31

`x86_64-linux`

❌ 24 packages failed to build:

expliot
expliot.dist
python312Packages.dipy
python312Packages.dipy.dist
python312Packages.gstools
python312Packages.gstools.dist
python312Packages.nilearn
python312Packages.nilearn.dist
python312Packages.niworkflows
python312Packages.niworkflows.dist
python312Packages.pykrige
python312Packages.pykrige.dist
python313Packages.atopile
python313Packages.atopile.dist
python313Packages.dipy
python313Packages.dipy.dist
python313Packages.gstools
python313Packages.gstools.dist
python313Packages.nilearn
python313Packages.nilearn.dist
python313Packages.niworkflows
python313Packages.niworkflows.dist
python313Packages.pykrige
python313Packages.pykrige.dist

✅ 253 packages built:

ants
appcsxcad
bambu-studio
bambu-studio.debug
c3d
cloudcompare
csxcad
dune3d
elastix
elmerfem
exhibit
ezminc
f3d
f3d.man
freecad
gdcm
gmsh
haskellPackages.opencascade-hs
haskellPackages.opencascade-hs.doc
haskellPackages.waterfall-cad
haskellPackages.waterfall-cad-examples
haskellPackages.waterfall-cad-examples.doc
haskellPackages.waterfall-cad-svg
haskellPackages.waterfall-cad-svg.doc
haskellPackages.waterfall-cad.doc
horizon-eda
inkcut
inkcut.dist
inkscape-extensions.inkcut
intensity-normalization (python313Packages.intensity-normalization)
intensity-normalization.dist (python313Packages.intensity-normalization.dist)
interactive-html-bom
interactive-html-bom.dist
itk (itk_5)
itk_5_2
kicad
kicad-small
kicad-testing
kicad-testing-small
kicad-unstable
kicad-unstable-small
kicadAddons.kikit
kicadAddons.kikit-library
kikit
kikit.dist
librepcb
libsForQt5.qcsxcad (plasma5Packages.qcsxcad)
libsForQt5.qcsxcad.dev (plasma5Packages.qcsxcad.dev)
mirtk
mrtrix
netgen (python313Packages.netgen-mesher)
octavePackages.bim
octavePackages.dicom
octavePackages.msh
opencascade-occt
opencascade-occt_7_6
opencascade-occt_7_6_1
openems
orca-slicer
orca-slicer.debug
otb
paraview
pcl
prusa-slicer
prusa-slicer.debug
python312Packages.dcmstack
python312Packages.dcmstack.dist
python312Packages.deid
python312Packages.deid.dist
python312Packages.dicom-numpy
python312Packages.dicom-numpy.dist
python312Packages.dicom2nifti
python312Packages.dicom2nifti.dist
python312Packages.dicomweb-client
python312Packages.dicomweb-client.dist
python312Packages.enamlx
python312Packages.enamlx.dist
python312Packages.f3d
python312Packages.f3d.man
python312Packages.fast-simplification
python312Packages.fast-simplification.dist
python312Packages.fslpy
python312Packages.fslpy.dist
python312Packages.gdcm
python312Packages.gmsh
python312Packages.heudiconv
python312Packages.heudiconv.dist
python312Packages.highdicom
python312Packages.highdicom.dist
python312Packages.horizon-eda
python312Packages.ifcopenshell
python312Packages.intensity-normalization
python312Packages.intensity-normalization.dist
python312Packages.itk
python312Packages.kicad
python312Packages.kicadcliwrapper
python312Packages.kicadcliwrapper.dist
python312Packages.mayavi
python312Packages.mayavi.dist
python312Packages.medpy
python312Packages.medpy.dist
python312Packages.medvol
python312Packages.medvol.dist
python312Packages.napari-nifti
python312Packages.napari-nifti.dist
python312Packages.netgen-mesher
python312Packages.nibabel
python312Packages.nibabel.dist
python312Packages.nipy
python312Packages.nipy.dist
python312Packages.nipype
python312Packages.nipype.dist
python312Packages.nitime
python312Packages.nitime.dist
python312Packages.nitransforms
python312Packages.nitransforms.dist
python312Packages.pcbnewtransition
python312Packages.pcbnewtransition.dist
python312Packages.pybids
python312Packages.pybids.dist
python312Packages.pydicom
python312Packages.pydicom.dist
python312Packages.pylibjpeg
python312Packages.pylibjpeg-openjpeg
python312Packages.pylibjpeg-openjpeg.dist
python312Packages.pylibjpeg.dist
python312Packages.pymatgen
python312Packages.pymatgen.dist
python312Packages.pymedio
python312Packages.pymedio.dist
python312Packages.pynetdicom
python312Packages.pynetdicom.dist
python312Packages.pyorthanc
python312Packages.pyorthanc.dist
python312Packages.pyotb
python312Packages.pyotb.dist
python312Packages.pyradiomics
python312Packages.pyradiomics.dist
python312Packages.python-csxcad
python312Packages.python-csxcad.dist
python312Packages.python-openems
python312Packages.python-openems.dist
python312Packages.pythonocc-core
python312Packages.pyvista
python312Packages.pyvista.dist
python312Packages.sfepy
python312Packages.sfepy.dist
python312Packages.simpleitk
python312Packages.simpleitk.dist
python312Packages.sumo
python312Packages.sumo.dist
python312Packages.templateflow
python312Packages.templateflow.dist
python312Packages.torchio
python312Packages.torchio.dist
python312Packages.trx-python
python312Packages.trx-python.dist
python312Packages.vtk
python312Packages.xnatpy
python312Packages.xnatpy.dist
python313Packages.dcmstack
python313Packages.dcmstack.dist
python313Packages.deid
python313Packages.deid.dist
python313Packages.dicom-numpy
python313Packages.dicom-numpy.dist
python313Packages.dicom2nifti
python313Packages.dicom2nifti.dist
python313Packages.dicomweb-client
python313Packages.dicomweb-client.dist
python313Packages.enamlx
python313Packages.enamlx.dist
python313Packages.f3d
python313Packages.f3d.man
python313Packages.fast-simplification
python313Packages.fast-simplification.dist
python313Packages.fslpy
python313Packages.fslpy.dist
python313Packages.gdcm
python313Packages.gmsh
python313Packages.heudiconv
python313Packages.heudiconv.dist
python313Packages.highdicom
python313Packages.highdicom.dist
python313Packages.horizon-eda
python313Packages.ifcopenshell
python313Packages.itk
python313Packages.kicad
python313Packages.kicadcliwrapper
python313Packages.kicadcliwrapper.dist
python313Packages.medpy
python313Packages.medpy.dist
python313Packages.medvol
python313Packages.medvol.dist
python313Packages.napari-nifti
python313Packages.napari-nifti.dist
python313Packages.nibabel
python313Packages.nibabel.dist
python313Packages.nipy
python313Packages.nipy.dist
python313Packages.nipype
python313Packages.nipype.dist
python313Packages.nitime
python313Packages.nitime.dist
python313Packages.nitransforms
python313Packages.nitransforms.dist
python313Packages.pcbnewtransition
python313Packages.pcbnewtransition.dist
python313Packages.pybids
python313Packages.pybids.dist
python313Packages.pydicom
python313Packages.pydicom.dist
python313Packages.pylibjpeg
python313Packages.pylibjpeg-openjpeg
python313Packages.pylibjpeg-openjpeg.dist
python313Packages.pylibjpeg.dist
python313Packages.pymedio
python313Packages.pymedio.dist
python313Packages.pynetdicom
python313Packages.pynetdicom.dist
python313Packages.pyorthanc
python313Packages.pyorthanc.dist
python313Packages.pyotb
python313Packages.pyotb.dist
python313Packages.pyradiomics
python313Packages.pyradiomics.dist
python313Packages.python-csxcad
python313Packages.python-csxcad.dist
python313Packages.pythonocc-core
python313Packages.pyvista
python313Packages.pyvista.dist
python313Packages.simpleitk
python313Packages.simpleitk.dist
python313Packages.templateflow
python313Packages.templateflow.dist
python313Packages.torchio
python313Packages.torchio.dist
python313Packages.trx-python
python313Packages.trx-python.dist
python313Packages.vtk
python313Packages.xnatpy
python313Packages.xnatpy.dist
rtabmap
simpleitk
super-slicer (super-slicer-latest)
super-slicer-beta
super-slicer-beta.debug
super-slicer.debug (super-slicer-latest.debug)
therion
vtk (vtk_9_5)
vtk-full
vtkWithQt5
vtkWithQt6

Error logs: `x86_64-linux`

python312Packages.dipy

[8/123] Generating 'dipy/denoise/nlmeans_block.cpython-312-x86_64-linux-gnu.so.p/nlmeans_block.c' [9/123] Generating 'dipy/denoise/denspeed.cpython-312-x86_64-linux-gnu.so.p/denspeed.c' [10/123] Generating 'dipy/align/transforms.cpython-312-x86_64-linux-gnu.so.p/transforms.c' [11/123] Generating 'dipy/align/bundlemin.cpython-312-x86_64-linux-gnu.so.p/bundlemin.c' [12/123] Generating 'dipy/direction/pmf.cpython-312-x86_64-linux-gnu.so.p/pmf.c' [13/123] Generating 'dipy/denoise/pca_noise_estimate.cpython-312-x86_64-linux-gnu.so.p/pca_noise_estimate.c' [14/123] Generating 'dipy/direction/closest_peak_direction_getter.cpython-312-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c' [15/123] Generating 'dipy/denoise/shift_twist_convolution.cpython-312-x86_64-linux-gnu.so.p/shift_twist_convolution.c' [16/123] Generating 'dipy/direction/probabilistic_direction_getter.cpython-312-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c' [17/123] Generating 'dipy/direction/bootstrap_direction_getter.cpython-312-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c' [18/123] Generating 'dipy/align/parzenhist.cpython-312-x86_64-linux-gnu.so.p/parzenhist.c' [19/123] Generating 'dipy/direction/ptt_direction_getter.cpython-312-x86_64-linux-gnu.so.p/ptt_direction_getter.c' [20/123] Generating 'dipy/align/expectmax.cpython-312-x86_64-linux-gnu.so.p/expectmax.c' [21/123] Generating 'dipy/align/sumsqdiff.cpython-312-x86_64-linux-gnu.so.p/sumsqdiff.c' [22/123] Generating 'dipy/align/crosscorr.cpython-312-x86_64-linux-gnu.so.p/crosscorr.c' [23/123] Generating 'dipy/core/interpolation.cpython-312-x86_64-linux-gnu.so.p/interpolation.c' [24/123] Generating 'dipy/align/vector_fields.cpython-312-x86_64-linux-gnu.so.p/vector_fields.c' ninja: build stopped: subcommand failed.

ERROR Backend subprocess exited when trying to invoke build_wheel

python312Packages.nilearn

Finished executing pythonRemoveTestsDir
Running phase: installCheckPhase
@nix { "action": "setPhase", "phase": "installCheckPhase" }
no Makefile or custom installCheckPhase, doing nothing
Running phase: pythonCatchConflictsPhase
@nix { "action": "setPhase", "phase": "pythonCatchConflictsPhase" }
Running phase: pythonRemoveBinBytecodePhase
@nix { "action": "setPhase", "phase": "pythonRemoveBinBytecodePhase" }
Running phase: pythonImportsCheckPhase
@nix { "action": "setPhase", "phase": "pythonImportsCheckPhase" }
Executing pythonImportsCheckPhase
Running phase: pytestCheckPhase
@nix { "action": "setPhase", "phase": "pytestCheckPhase" }
Executing pytestCheckPhase
pytest flags: -m pytest nilearn/connectome/tests -k not\ \(test_clean_confounds\)\ and\ not\ \(test_check_estimator_invalid_group_sparse_covariance\)
ERROR: usage: __main__.py [options] [file_or_dir] [file_or_dir] [...]
__main__.py: error: unrecognized arguments: --timeout=45
  inifile: /build/source/pyproject.toml
  rootdir: /build/source

python313Packages.dipy

[8/123] Generating 'dipy/denoise/denspeed.cpython-313-x86_64-linux-gnu.so.p/denspeed.c' [9/123] Generating 'dipy/denoise/nlmeans_block.cpython-313-x86_64-linux-gnu.so.p/nlmeans_block.c' [10/123] Generating 'dipy/denoise/pca_noise_estimate.cpython-313-x86_64-linux-gnu.so.p/pca_noise_estimate.c' [11/123] Generating 'dipy/direction/bootstrap_direction_getter.cpython-313-x86_64-linux-gnu.so.p/bootstrap_direction_getter.c' [12/123] Generating 'dipy/direction/closest_peak_direction_getter.cpython-313-x86_64-linux-gnu.so.p/closest_peak_direction_getter.c' [13/123] Generating 'dipy/align/bundlemin.cpython-313-x86_64-linux-gnu.so.p/bundlemin.c' [14/123] Generating 'dipy/denoise/shift_twist_convolution.cpython-313-x86_64-linux-gnu.so.p/shift_twist_convolution.c' [15/123] Generating 'dipy/direction/ptt_direction_getter.cpython-313-x86_64-linux-gnu.so.p/ptt_direction_getter.c' [16/123] Generating 'dipy/direction/pmf.cpython-313-x86_64-linux-gnu.so.p/pmf.c' [17/123] Generating 'dipy/direction/probabilistic_direction_getter.cpython-313-x86_64-linux-gnu.so.p/probabilistic_direction_getter.c' [18/123] Generating 'dipy/align/parzenhist.cpython-313-x86_64-linux-gnu.so.p/parzenhist.c' [19/123] Generating 'dipy/align/expectmax.cpython-313-x86_64-linux-gnu.so.p/expectmax.c' [20/123] Generating 'dipy/align/transforms.cpython-313-x86_64-linux-gnu.so.p/transforms.c' [21/123] Generating 'dipy/core/interpolation.cpython-313-x86_64-linux-gnu.so.p/interpolation.c' [22/123] Generating 'dipy/align/sumsqdiff.cpython-313-x86_64-linux-gnu.so.p/sumsqdiff.c' [23/123] Generating 'dipy/align/crosscorr.cpython-313-x86_64-linux-gnu.so.p/crosscorr.c' [24/123] Generating 'dipy/align/vector_fields.cpython-313-x86_64-linux-gnu.so.p/vector_fields.c' ninja: build stopped: subcommand failed.

ERROR Backend subprocess exited when trying to invoke build_wheel

qbisi · 2025-09-04T18:25:00Z

`nixpkgs-review` result

Generated using nixpkgs-review-gha

Command: nixpkgs-review pr 433252 -p opencascade-occt.tests.withVtk
Commit: 205d89f72385833f9b4312babbdac9b8b4fd0a31 (subsequent changes)
Merge: 7086c88c2a8e7234cfd64e02c1d7b7a8a64b14a0

Logs: https://github.com/qbisi/nixpkgs-review-gha/actions/runs/17466580536

`x86_64-linux`

✅ 1 package built:

opencascade-occt.tests.withVtk

`aarch64-linux`

✅ 1 package built:

opencascade-occt.tests.withVtk

`x86_64-darwin` (sandbox = true)

✅ 1 package built:

opencascade-occt.tests.withVtk

`aarch64-darwin` (sandbox = true)

✅ 1 package built:

opencascade-occt.tests.withVtk

tnytown force-pushed the tnytown/occt-add-vtk branch from 52f9f52 to d900136 Compare August 13, 2025 01:51

nixpkgs-ci bot added 10.rebuild-linux: 101-500 This PR causes between 101 and 500 packages to rebuild on Linux. 10.rebuild-darwin: 11-100 This PR causes between 11 and 100 packages to rebuild on Darwin. labels Aug 13, 2025

nix-owners bot requested a review from qbisi August 13, 2025 01:57

tnytown mentioned this pull request Aug 13, 2025

python3Packages.build123d: init at 0.10.0 #433247

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tnytown added 2 commits September 2, 2025 02:54

opencascade-occt: add optional vtk dependency

3f45d2c

opencascade-occt: enable exceptions

6b353e0

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opencascade-occt: use cmakeBool for all bool flags

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nixpkgs-ci bot added 12.approvals: 2 This PR was reviewed and approved by two persons. and removed 12.approvals: 1 This PR was reviewed and approved by one person. labels Sep 3, 2025

NickCao enabled auto-merge September 4, 2025 22:58

auto-merge was automatically disabled September 4, 2025 23:02
Pull Request is not mergeable

NickCao merged commit 6b64d13 into NixOS:master Sep 5, 2025
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