R: 4.5.0 -> 4.5.1

[r-ryantm]

Automatic update generated by nixpkgs-update tools. This update was made based on information from https://repology.org/project/r/versions.

meta.description for R is: Free software environment for statistical computing and graphics

meta.homepage for R is: http://www.r-project.org/

Updates performed

• Version update

To inspect upstream changes

Impact

Checks done

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• built on NixOS
• The tests defined in passthru.tests, if any, passed
• found 4.5.1 with grep in /nix/store/c7gnw9q3smnxh7n1hkiqbggs46w4yd3f-R-4.5.1
• found 4.5.1 in filename of file in /nix/store/c7gnw9q3smnxh7n1hkiqbggs46w4yd3f-R-4.5.1

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Rebuild report (if merged into master) (click to expand)

50 total rebuild path(s)

50 package rebuild(s)

First fifty rebuilds by attrpath

R
cantor
diffoscope
git-unroll
golden-cheetah-bin
jasp-desktop
jetbrains.dataspell
labplot
libsForQt5.cantor
plasma5Packages.cantor
postgresql13Packages.plr
postgresql14Packages.plr
postgresql15Packages.plr
postgresql16Packages.plr
postgresql17Packages.plr
postgresqlPackages.plr
python312Packages.cnvkit
python312Packages.flyingsquid
python312Packages.orange3
python312Packages.pgmpy
python312Packages.rchitect
python312Packages.rpy2
python312Packages.xgboost
python313Packages.cnvkit
python313Packages.flyingsquid
python313Packages.orange3
python313Packages.pgmpy
python313Packages.rchitect
python313Packages.rpy2
python313Packages.xgboost
quarto
radian
resorter
rstudio
rstudio-server
rstudioServerWrapper
rstudioWrapper
sage
sageWithDoc
spark
spark3
spark_3_4
spark_3_5
spip
tests.pkg-config.defaultPkgConfigPackages.libR
tests.pkg-config.defaultPkgConfigPackages.tests-combined
vscode-extensions.reditorsupport.r
xgboost
xgboostWithCuda

Instructions to test this update (click to expand)

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Either download from the cache:

nix-store -r /nix/store/c7gnw9q3smnxh7n1hkiqbggs46w4yd3f-R-4.5.1 \
  --option binary-caches 'https://cache.nixos.org/ https://nixpkgs-update-cache.nix-community.org/' \
  --option trusted-public-keys '
  nixpkgs-update-cache.nix-community.org-1:U8d6wiQecHUPJFSqHN9GSSmNkmdiFW7GW7WNAnHW0SM=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(The nixpkgs-update cache is only trusted for this store-path realization.)
For the cached download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A R https://github.com/r-ryantm/nixpkgs/archive/1c33220b1c912e39bbc09198e1f60eead5a280d2.tar.gz

Or:

nix build github:r-ryantm/nixpkgs/1c33220b1c912e39bbc09198e1f60eead5a280d2#R

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/c7gnw9q3smnxh7n1hkiqbggs46w4yd3f-R-4.5.1
ls -la /nix/store/c7gnw9q3smnxh7n1hkiqbggs46w4yd3f-R-4.5.1/bin

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Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

nixpkgs-review took longer than 180m and timed out

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Maintainer pings

cc @jbedo @timokau @omasanori @7c6f434c @collares for testing.

Tip

As a maintainer, if your package is located under pkgs/by-name/*, you can comment @NixOS/nixpkgs-merge-bot merge to automatically merge this update using the nixpkgs-merge-bot.

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Add a 👍 reaction to pull requests you find important.

[jbedo]

Closing in favour of #416842