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[Backport release-25.05] sumatools: drop #418232

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Merged
Aleksanaa merged 1 commit into from
Jun 21, 2025
Merged

[Backport release-25.05] sumatools: drop #418232

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77 changes: 0 additions & 77 deletions pkgs/applications/science/biology/sumatools/default.nix
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3 changes: 3 additions & 0 deletions pkgs/top-level/aliases.nix
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Original file line number Diff line number Diff line change
Expand Up @@ -1800,6 +1800,9 @@ mapAliases {
strawberry-qt5 = throw "strawberry-qt5 has been replaced by strawberry-qt6"; # Added 2024-11-22
strelka = throw "strelka depends on Python 2.6+, and does not support Python 3."; # Added 2025-03-17
suidChroot = throw "'suidChroot' has been dropped as it was unmaintained, failed to build and had questionable security considerations"; # Added 2025-05-17
sumaclust = throw "'sumaclust' has been removed as it was archived upstream and broken with GCC 14"; # Added 2025-06-14
sumalibs = throw "'sumalibs' has been removed as it was archived upstream and broken with GCC 14"; # Added 2025-06-14
sumatra = throw "'sumatra' has been removed as it was archived upstream and broken with GCC 14"; # Added 2025-06-14
sumneko-lua-language-server = lua-language-server; # Added 2023-02-07
sumokoin = throw "sumokoin has been removed as it was abandoned upstream"; # Added 2024-11-23
supertag = throw "supertag has been removed as it was abandoned upstream and fails to build"; # Added 2025-04-20
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6 changes: 0 additions & 6 deletions pkgs/top-level/all-packages.nix
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Original file line number Diff line number Diff line change
Expand Up @@ -15639,12 +15639,6 @@ with pkgs;

samtools = callPackage ../applications/science/biology/samtools { };

inherit (callPackages ../applications/science/biology/sumatools { })
sumalibs
sumaclust
sumatra
;

trimmomatic = callPackage ../applications/science/biology/trimmomatic {
jdk = pkgs.jdk21_headless;
# Reduce closure size
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