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fastqc: init at 0.12.1 #294891

Merged
merged 2 commits into from
Mar 27, 2024
Merged

fastqc: init at 0.12.1 #294891

merged 2 commits into from
Mar 27, 2024

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dflores1
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@dflores1 dflores1 commented Mar 11, 2024

Description of changes

New package called FastQC for the science/biology category. It's a DNA sequence quality checker written in JAVA. It can run on the command line or with its graphical interface.

https://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Things done

  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandboxing enabled in nix.conf? (See Nix manual)
    • sandbox = relaxed
    • sandbox = true
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 24.05 Release Notes (or backporting 23.05 and 23.11 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
  • Fits CONTRIBUTING.md.

@NixOSInfra NixOSInfra added the 12. first-time contribution This PR is the author's first one; please be gentle! label Mar 11, 2024
@ofborg ofborg bot added 10.rebuild-darwin: 0 This PR does not cause any packages to rebuild on Darwin 10.rebuild-linux: 0 This PR does not cause any packages to rebuild on Linux 8.has: package (new) This PR adds a new package 11.by: package-maintainer This PR was created by the maintainer of the package it changes 10.rebuild-darwin: 1-10 10.rebuild-darwin: 1 10.rebuild-linux: 1-10 10.rebuild-linux: 1 and removed 10.rebuild-darwin: 0 This PR does not cause any packages to rebuild on Darwin 10.rebuild-linux: 0 This PR does not cause any packages to rebuild on Linux labels Mar 11, 2024
@dflores1
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As mentioned before, this software comes with a gpl3plus license, but includes a precompiled JAVA library released with an asl20 license.

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@leona-ya leona-ya left a comment

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Can you also squash the commits touching the package (not the one in which you add your maintainer entry) in one commit fastqc: init at 0.12.1 (see https://github.com/NixOS/nixpkgs/blob/master/CONTRIBUTING.md#commit-conventions for details).

fastqc: remove trailing whitespaces

fastqc: moved to by-name hierarchy

Update pkgs/by-name/fa/fastqc/package.nix

Co-authored-by: OTABI Tomoya <[email protected]>

Update pkgs/by-name/fa/fastqc/package.nix

Co-authored-by: OTABI Tomoya <[email protected]>

Update pkgs/by-name/fa/fastqc/package.nix

Co-authored-by: OTABI Tomoya <[email protected]>

Update pkgs/by-name/fa/fastqc/package.nix

Co-authored-by: OTABI Tomoya <[email protected]>

Update pkgs/by-name/fa/fastqc/package.nix

Co-authored-by: OTABI Tomoya <[email protected]>

fastqc: suggested code changes applied

fastqc: added testVersion

fastqc: some corrections

fastqc: remove with lib;
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@natsukium natsukium left a comment

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LGTM, thank you.
Welcome to nixpkgs!🎉

@natsukium natsukium changed the title Fastqc fastqc: init at 0.12.1 Mar 27, 2024
@natsukium natsukium merged commit c7f5aae into NixOS:master Mar 27, 2024
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@dflores1 dflores1 deleted the fastqc branch April 3, 2024 11:44
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4 participants