magma: fix #220343 and separate CUDA build/run-time dependencies by ConnorBaker · Pull Request #220366 · NixOS/nixpkgs

ConnorBaker · 2023-03-09T17:52:32Z

Description of changes

Goal is to shrink the size of the closure, or modularize the components which are downloaded.

Also fixes #220343.

My hope is that, for packages which do not fully support CUDA redistributables, by creating separate symlinked copies of what cudatoolkit would provide we can improve the user experience.

Closure before:

/nix/store/qmnr18aqd08zdkhka695ici96k6nzirv-libunistring-1.0         	   1.7M	   1.7M
/nix/store/vv6rlzln7vhxk519rdsrzmhhlpyb5q2m-libidn2-2.3.2            	 254.1K	   2.0M
/nix/store/76l4v99sk83ylfwkz8wmwrm4s8h73rhd-glibc-2.35-224           	  28.9M	  30.8M
/nix/store/205vsmbfhq1q2vhgskpqyymqvba4mscp-gcc-11.3.0-lib           	   7.5M	  38.3M
/nix/store/2w4k8nvdyiggz717ygbbxchpnxrqc6y9-gcc-12.2.0-lib           	   7.8M	  38.6M
/nix/store/x6nnam5hk44mljbk782rcbd92jlnz8r6-pcre-8.45                	 514.4K	  31.3M
/nix/store/4vkv3rzky44hp2b8r13d8hr4ykvqhvwh-gnugrep-3.7              	 773.2K	  32.1M
/nix/store/5ynbf6wszmggr0abwifdagrixgnya5vy-bash-5.2-p15             	   1.6M	  32.4M
/nix/store/mg9l7phyhvi16p9g8g3g8fbyj4mr79gq-zlib-1.2.13              	 125.6K	  31.0M
/nix/store/6g6d4la7xsizvr8qg91f56jiqx149iqq-binutils-2.40-lib        	   2.7M	  33.7M
/nix/store/izdfacm4wfmfjbgl1k3qlfjslkkrb2kg-gfortran-12.2.0-lib      	  10.7M	  41.6M
/nix/store/yzbam1rxs24z2apzpdpgqwi5fcwbid6z-openblas-0.3.21          	  26.1M	  67.7M
/nix/store/azvwwb4994qm7b1fcz8gc3gnlf8zwzi4-blas-3                   	  53.3M	 121.0M
/nix/store/ia34rbsa6d2dalzk5f7hy5jp9zazpv24-gmp-with-cxx-6.2.1       	 729.2K	  39.3M
/nix/store/b8wwwcng8c0snvmcawvhiny4b2gr6yhh-mpfr-4.2.0               	 774.0K	  40.1M
/nix/store/jn9kg98dsaajx4mh95rb9r5rf2idglqh-attr-2.5.1               	  78.8K	  30.9M
/nix/store/bw9s084fzmb5h40x98mfry25blj4cr9r-acl-2.3.1                	 108.9K	  31.0M
/nix/store/jvl8dr21nrwhqywwxcl8di4j55765gvy-gmp-with-cxx-stage4-6.2.1	 730.4K	  39.3M
/nix/store/bg8f47vihykgqcgblxkfk9sbvc4dnksa-coreutils-9.1            	   1.4M	  40.9M
/nix/store/lp8qrhb6hs42jwbapzq20l05jf4kyicq-glibc-2.35-224-bin       	   3.0M	  33.8M
/nix/store/wyzaa007anaxxhmrcbffm597v14n2mxs-linux-headers-6.1        	   6.0M	   6.0M
/nix/store/pqnd39aq2sksad2zvswjcpkqdc7ig3f9-glibc-2.35-224-dev       	   2.2M	  42.0M
/nix/store/fhzz4yrdy17czwc9i4swhlpcp445inzb-binutils-2.40            	  28.2M	  69.6M
/nix/store/xnrwkaidhxjsb70c2bnrl6j0mmr0y3qg-expand-response-params   	  16.4K	  30.9M
/nix/store/qkshx57xqsr4g4v8ga0jn8jrgnyaam3f-binutils-wrapper-2.40    	  48.5K	  84.8M
/nix/store/f6172g5agk13134pdx5hl1qjmw8a4sdw-libmpc-1.3.1             	 273.4K	  40.4M
/nix/store/fdfcva0q4zgnm1gpc7wmz4cgq7c3hxx1-isl-0.20                 	   2.5M	  41.8M
/nix/store/vns64fmwpqz8himgfdy8h7i29h9gbryc-gcc-11.3.0               	 180.6M	 242.2M
/nix/store/ds6ivg31k3l0pjhhf3s769bkpmafa54g-gcc-wrapper-11.3.0       	  55.2K	 278.4M
/nix/store/l0d6c6wa5sk4wx70x77k3d5clmny7sw6-cuda_cudart-11.7.60      	   6.2M	   6.2M
/nix/store/mxcbimi0gs021wwyfik63km6v26pzhp8-libcublas-11.10.1.25     	   1.1G	   1.2G
/nix/store/ss8jw175bhs3cmlzmmhsbpqihy457ids-libcusparse-11.7.3.50    	 488.1M	 488.1M
/nix/store/rbm214ji7jqk58g8shhkmhvl6xflblz0-cuda_cupti-11.7.50       	  88.4M	  88.4M
/nix/store/virnlrgvysrn1nl6bra798fy6x731nj0-cuda_nvprof-11.7.50      	   9.9M	 129.1M
/nix/store/zrpivbb39kiyij6dns4pz4wh8nik6m3y-cuda_nvcc-11.7.64        	 114.8M	 393.2M
/nix/store/mpj8ij172g466nncmnfqpz694pa746dr-cuda-redist-11.7         	  63.0K	   2.1G
/nix/store/ib9ckb796i7nqj0fy6iankvhyfc6az70-magma-2.7.1              	 429.4M	   2.6G

Closure after:

/nix/store/qmnr18aqd08zdkhka695ici96k6nzirv-libunistring-1.0         	   1.7M	   1.7M
/nix/store/vv6rlzln7vhxk519rdsrzmhhlpyb5q2m-libidn2-2.3.2            	 254.1K	   2.0M
/nix/store/76l4v99sk83ylfwkz8wmwrm4s8h73rhd-glibc-2.35-224           	  28.9M	  30.8M
/nix/store/205vsmbfhq1q2vhgskpqyymqvba4mscp-gcc-11.3.0-lib           	   7.5M	  38.3M
/nix/store/mxcbimi0gs021wwyfik63km6v26pzhp8-libcublas-11.10.1.25     	   1.1G	   1.2G
/nix/store/ss8jw175bhs3cmlzmmhsbpqihy457ids-libcusparse-11.7.3.50    	 488.1M	 488.1M
/nix/store/23ygxbxapna1d80v447mnpfa2n78ay0x-cuda-redist-11.7         	  10.5K	   1.6G
/nix/store/2w4k8nvdyiggz717ygbbxchpnxrqc6y9-gcc-12.2.0-lib           	   7.8M	  38.6M
/nix/store/x6nnam5hk44mljbk782rcbd92jlnz8r6-pcre-8.45                	 514.4K	  31.3M
/nix/store/4vkv3rzky44hp2b8r13d8hr4ykvqhvwh-gnugrep-3.7              	 773.2K	  32.1M
/nix/store/5ynbf6wszmggr0abwifdagrixgnya5vy-bash-5.2-p15             	   1.6M	  32.4M
/nix/store/mg9l7phyhvi16p9g8g3g8fbyj4mr79gq-zlib-1.2.13              	 125.6K	  31.0M
/nix/store/6g6d4la7xsizvr8qg91f56jiqx149iqq-binutils-2.40-lib        	   2.7M	  33.7M
/nix/store/izdfacm4wfmfjbgl1k3qlfjslkkrb2kg-gfortran-12.2.0-lib      	  10.7M	  41.6M
/nix/store/yzbam1rxs24z2apzpdpgqwi5fcwbid6z-openblas-0.3.21          	  26.1M	  67.7M
/nix/store/azvwwb4994qm7b1fcz8gc3gnlf8zwzi4-blas-3                   	  53.3M	 121.0M
/nix/store/ia34rbsa6d2dalzk5f7hy5jp9zazpv24-gmp-with-cxx-6.2.1       	 729.2K	  39.3M
/nix/store/b8wwwcng8c0snvmcawvhiny4b2gr6yhh-mpfr-4.2.0               	 774.0K	  40.1M
/nix/store/jn9kg98dsaajx4mh95rb9r5rf2idglqh-attr-2.5.1               	  78.8K	  30.9M
/nix/store/bw9s084fzmb5h40x98mfry25blj4cr9r-acl-2.3.1                	 108.9K	  31.0M
/nix/store/jvl8dr21nrwhqywwxcl8di4j55765gvy-gmp-with-cxx-stage4-6.2.1	 730.4K	  39.3M
/nix/store/bg8f47vihykgqcgblxkfk9sbvc4dnksa-coreutils-9.1            	   1.4M	  40.9M
/nix/store/lp8qrhb6hs42jwbapzq20l05jf4kyicq-glibc-2.35-224-bin       	   3.0M	  33.8M
/nix/store/wyzaa007anaxxhmrcbffm597v14n2mxs-linux-headers-6.1        	   6.0M	   6.0M
/nix/store/pqnd39aq2sksad2zvswjcpkqdc7ig3f9-glibc-2.35-224-dev       	   2.2M	  42.0M
/nix/store/fhzz4yrdy17czwc9i4swhlpcp445inzb-binutils-2.40            	  28.2M	  69.6M
/nix/store/xnrwkaidhxjsb70c2bnrl6j0mmr0y3qg-expand-response-params   	  16.4K	  30.9M
/nix/store/qkshx57xqsr4g4v8ga0jn8jrgnyaam3f-binutils-wrapper-2.40    	  48.5K	  84.8M
/nix/store/f6172g5agk13134pdx5hl1qjmw8a4sdw-libmpc-1.3.1             	 273.4K	  40.4M
/nix/store/fdfcva0q4zgnm1gpc7wmz4cgq7c3hxx1-isl-0.20                 	   2.5M	  41.8M
/nix/store/vns64fmwpqz8himgfdy8h7i29h9gbryc-gcc-11.3.0               	 180.6M	 242.2M
/nix/store/ds6ivg31k3l0pjhhf3s769bkpmafa54g-gcc-wrapper-11.3.0       	  55.2K	 278.4M
/nix/store/l0d6c6wa5sk4wx70x77k3d5clmny7sw6-cuda_cudart-11.7.60      	   6.2M	   6.2M
/nix/store/rbm214ji7jqk58g8shhkmhvl6xflblz0-cuda_cupti-11.7.50       	  88.4M	  88.4M
/nix/store/virnlrgvysrn1nl6bra798fy6x731nj0-cuda_nvprof-11.7.50      	   9.9M	 129.1M
/nix/store/zrpivbb39kiyij6dns4pz4wh8nik6m3y-cuda_nvcc-11.7.64        	 114.8M	 393.2M
/nix/store/fmv2m75gvby3jg106ibs4k956yl59b66-cuda-native-redist-11.7  	  53.3K	 497.8M
/nix/store/zwjfybn9vah5vkxmxl9qlawxmx7zmagp-magma-2.7.1              	 429.4M	   2.6G

Details

Common derivations:

/nix/store/qmnr18aqd08zdkhka695ici96k6nzirv-libunistring-1.0         	   1.7M	   1.7M
/nix/store/vv6rlzln7vhxk519rdsrzmhhlpyb5q2m-libidn2-2.3.2            	 254.1K	   2.0M
/nix/store/76l4v99sk83ylfwkz8wmwrm4s8h73rhd-glibc-2.35-224           	  28.9M	  30.8M
/nix/store/205vsmbfhq1q2vhgskpqyymqvba4mscp-gcc-11.3.0-lib           	   7.5M	  38.3M
/nix/store/2w4k8nvdyiggz717ygbbxchpnxrqc6y9-gcc-12.2.0-lib           	   7.8M	  38.6M
/nix/store/x6nnam5hk44mljbk782rcbd92jlnz8r6-pcre-8.45                	 514.4K	  31.3M
/nix/store/4vkv3rzky44hp2b8r13d8hr4ykvqhvwh-gnugrep-3.7              	 773.2K	  32.1M
/nix/store/5ynbf6wszmggr0abwifdagrixgnya5vy-bash-5.2-p15             	   1.6M	  32.4M
/nix/store/mg9l7phyhvi16p9g8g3g8fbyj4mr79gq-zlib-1.2.13              	 125.6K	  31.0M
/nix/store/6g6d4la7xsizvr8qg91f56jiqx149iqq-binutils-2.40-lib        	   2.7M	  33.7M
/nix/store/izdfacm4wfmfjbgl1k3qlfjslkkrb2kg-gfortran-12.2.0-lib      	  10.7M	  41.6M
/nix/store/yzbam1rxs24z2apzpdpgqwi5fcwbid6z-openblas-0.3.21          	  26.1M	  67.7M
/nix/store/azvwwb4994qm7b1fcz8gc3gnlf8zwzi4-blas-3                   	  53.3M	 121.0M
/nix/store/ia34rbsa6d2dalzk5f7hy5jp9zazpv24-gmp-with-cxx-6.2.1       	 729.2K	  39.3M
/nix/store/b8wwwcng8c0snvmcawvhiny4b2gr6yhh-mpfr-4.2.0               	 774.0K	  40.1M
/nix/store/jn9kg98dsaajx4mh95rb9r5rf2idglqh-attr-2.5.1               	  78.8K	  30.9M
/nix/store/bw9s084fzmb5h40x98mfry25blj4cr9r-acl-2.3.1                	 108.9K	  31.0M
/nix/store/jvl8dr21nrwhqywwxcl8di4j55765gvy-gmp-with-cxx-stage4-6.2.1	 730.4K	  39.3M
/nix/store/bg8f47vihykgqcgblxkfk9sbvc4dnksa-coreutils-9.1            	   1.4M	  40.9M
/nix/store/lp8qrhb6hs42jwbapzq20l05jf4kyicq-glibc-2.35-224-bin       	   3.0M	  33.8M
/nix/store/wyzaa007anaxxhmrcbffm597v14n2mxs-linux-headers-6.1        	   6.0M	   6.0M
/nix/store/pqnd39aq2sksad2zvswjcpkqdc7ig3f9-glibc-2.35-224-dev       	   2.2M	  42.0M
/nix/store/fhzz4yrdy17czwc9i4swhlpcp445inzb-binutils-2.40            	  28.2M	  69.6M
/nix/store/xnrwkaidhxjsb70c2bnrl6j0mmr0y3qg-expand-response-params   	  16.4K	  30.9M
/nix/store/qkshx57xqsr4g4v8ga0jn8jrgnyaam3f-binutils-wrapper-2.40    	  48.5K	  84.8M
/nix/store/f6172g5agk13134pdx5hl1qjmw8a4sdw-libmpc-1.3.1             	 273.4K	  40.4M
/nix/store/fdfcva0q4zgnm1gpc7wmz4cgq7c3hxx1-isl-0.20                 	   2.5M	  41.8M
/nix/store/vns64fmwpqz8himgfdy8h7i29h9gbryc-gcc-11.3.0               	 180.6M	 242.2M
/nix/store/ds6ivg31k3l0pjhhf3s769bkpmafa54g-gcc-wrapper-11.3.0       	  55.2K	 278.4M
/nix/store/l0d6c6wa5sk4wx70x77k3d5clmny7sw6-cuda_cudart-11.7.60      	   6.2M	   6.2M
/nix/store/mxcbimi0gs021wwyfik63km6v26pzhp8-libcublas-11.10.1.25     	   1.1G	   1.2G
/nix/store/ss8jw175bhs3cmlzmmhsbpqihy457ids-libcusparse-11.7.3.50    	 488.1M	 488.1M
/nix/store/rbm214ji7jqk58g8shhkmhvl6xflblz0-cuda_cupti-11.7.50       	  88.4M	  88.4M
/nix/store/virnlrgvysrn1nl6bra798fy6x731nj0-cuda_nvprof-11.7.50      	   9.9M	 129.1M
/nix/store/zrpivbb39kiyij6dns4pz4wh8nik6m3y-cuda_nvcc-11.7.64        	 114.8M	 393.2M

Derivations unique to before:

/nix/store/mpj8ij172g466nncmnfqpz694pa746dr-cuda-redist-11.7         	  63.0K	   2.1G
/nix/store/ib9ckb796i7nqj0fy6iankvhyfc6az70-magma-2.7.1              	 429.4M	   2.6G

Derivations unique to after:

/nix/store/23ygxbxapna1d80v447mnpfa2n78ay0x-cuda-redist-11.7         	  10.5K	   1.6G
/nix/store/fmv2m75gvby3jg106ibs4k956yl59b66-cuda-native-redist-11.7  	  53.3K	 497.8M
/nix/store/zwjfybn9vah5vkxmxl9qlawxmx7zmagp-magma-2.7.1              	 429.4M	   2.6G

Things done

ConnorBaker · 2023-03-09T19:37:04Z

@NixOS/cuda-maintainers

pkgs/development/libraries/science/math/magma/generic.nix

ConnorBaker · 2023-03-09T22:27:23Z

@SomeoneSerge I just understood what you meant now when you asked whether setting CUDAHOSTCXX was still needed. You're right, it's not necessary since you're setting it here:

nixpkgs/pkgs/development/compilers/cudatoolkit/redist/overrides.nix

Line 50 in a59944f

export CUDAHOSTCXX=${cc}/bin;

Build fines without it, too: no more errors when trying to detect the CUDA version during CMake's configurePhase.

pkgs/development/libraries/science/math/magma/generic.nix

ConnorBaker · 2023-03-09T23:27:49Z

@tbenst this should be fully ready for you to review now, sorry about the delay!

pkgs/development/libraries/science/math/magma/generic.nix

SomeoneSerge · 2023-03-14T09:37:16Z

Result of nixpkgs-review pr 220366 --extra-nixpkgs-config '{ cudaCapabilities = [ "8.6" ]; }' run on x86_64-linux 1

11 packages built:

magma (magma-cuda ,magma_2_7_1)
magma-hip
magma_2_6_2
python310Packages.torchWithCuda
python310Packages.torchWithCuda.dev
python310Packages.torchWithCuda.dist
python310Packages.torchWithCuda.lib
python310Packages.torchWithRocm
python310Packages.torchWithRocm.dev
python310Packages.torchWithRocm.dist
python310Packages.torchWithRocm.lib

nixos-discourse · 2023-03-16T12:44:01Z

This pull request has been mentioned on NixOS Discourse. There might be relevant details there:

https://discourse.nixos.org/t/tweag-nix-dev-update-45/26397/1

samuela · 2023-03-16T22:50:45Z

cc @tbenst friendly ping as maintainer

tbenst · 2023-03-21T04:00:08Z

cc @tbenst friendly ping as maintainer

Nice work on this! I’m hoping to finish my PhD soon(TM) and had to step away from Nix in favor of productivity so I’m not in a position to review / maintain right now. Sorry about that! Please feel free to remove me as a maintainer.

…toolkit.cc

ConnorBaker · 2023-03-21T19:38:41Z

I removed @tbenst and added myself as a maintainer.

@samuela are we okay to merge?

samuela

LGTM! @SomeoneSerge does this look ok to you?

samuela · 2023-03-21T19:48:01Z

Nice work on this! I’m hoping to finish my PhD soon(TM) and had to step away from Nix in favor of productivity so I’m not in a position to review / maintain right now. Sorry about that! Please feel free to remove me as a maintainer.

No problem, @tbenst . Best of luck with your defense!

SomeoneSerge · 2023-03-21T23:49:52Z

Result of nixpkgs-review pr 220366 --extra-nixpkgs-config '{ cudaCapabilities = [ "8.6" ]; }' run on x86_64-linux 1

11 packages built:

magma (magma-cuda ,magma_2_7_1)
magma-hip
magma_2_6_2
python310Packages.torchWithCuda
python310Packages.torchWithCuda.dev
python310Packages.torchWithCuda.dist
python310Packages.torchWithCuda.lib
python310Packages.torchWithRocm
python310Packages.torchWithRocm.dev
python310Packages.torchWithRocm.dist
python310Packages.torchWithRocm.lib

samuela · 2023-03-22T02:34:01Z

Great, thanks so much @ConnorBaker and @SomeoneSerge !

nixos-discourse · 2023-03-31T14:38:06Z

This pull request has been mentioned on NixOS Discourse. There might be relevant details there:

https://discourse.nixos.org/t/tweag-nix-dev-update-46/26872/1

ConnorBaker self-assigned this Mar 9, 2023

ConnorBaker added the 6.topic: cuda Parallel computing platform and API label Mar 9, 2023

ofborg bot requested a review from tbenst March 9, 2023 18:07

ofborg bot added 10.rebuild-darwin: 1-10 This PR causes between 1 and 10 packages to rebuild on Darwin. 10.rebuild-linux: 1-10 This PR causes between 1 and 10 packages to rebuild on Linux. labels Mar 9, 2023

ConnorBaker changed the title ~~magma: make a distinction between CUDA build/run-time dependencies~~ magma: separate CUDA build/run-time dependencies; fix #220343 Mar 9, 2023

ConnorBaker changed the title ~~magma: separate CUDA build/run-time dependencies; fix #220343~~ magma: fix #220343 and separate CUDA build/run-time dependencies Mar 9, 2023

ConnorBaker force-pushed the feat/magma-split-out-cuda-nativeBuildInputs branch from d8b393e to 37c8d5f Compare March 9, 2023 19:34

ConnorBaker marked this pull request as ready for review March 9, 2023 19:36

ConnorBaker mentioned this pull request Mar 9, 2023

Build failure: magma #220357

Closed

samuela requested changes Mar 9, 2023

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ConnorBaker force-pushed the feat/magma-split-out-cuda-nativeBuildInputs branch from 37c8d5f to c5c6b76 Compare March 9, 2023 21:11

ConnorBaker requested a review from samuela March 9, 2023 21:14

ConnorBaker force-pushed the feat/magma-split-out-cuda-nativeBuildInputs branch 2 times, most recently from b8041ce to ebd45bb Compare March 9, 2023 22:23

ConnorBaker force-pushed the feat/magma-split-out-cuda-nativeBuildInputs branch from ebd45bb to c4905c0 Compare March 9, 2023 22:32

samuela approved these changes Mar 9, 2023

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ConnorBaker commented Mar 9, 2023

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ConnorBaker force-pushed the feat/magma-split-out-cuda-nativeBuildInputs branch from c4905c0 to 2b47a7a Compare March 9, 2023 23:02

magma: fix NixOS#220343 and separate CUDA build/run-time dependencies

0cf4ddd

ConnorBaker force-pushed the feat/magma-split-out-cuda-nativeBuildInputs branch from 2b47a7a to 0cf4ddd Compare March 13, 2023 22:40

SomeoneSerge reviewed Mar 14, 2023

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ConnorBaker mentioned this pull request Mar 17, 2023

Change default nixpkgs' cudaCapabilities #221564

Open

9 tasks

Connor Baker added 2 commits March 21, 2023 15:36

magma: use cudaPackages.backendStdenv.cc instead of cudaPackages.cuda…

504fb50

…toolkit.cc

magma: remove tbenst from maintainers, add connorbaker

dcbb5ed

ConnorBaker force-pushed the feat/magma-split-out-cuda-nativeBuildInputs branch from c312bd2 to dcbb5ed Compare March 21, 2023 19:37

samuela approved these changes Mar 21, 2023

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ofborg bot added the 11.by: package-maintainer This PR was created by a maintainer of all the package it changes. label Mar 21, 2023

SomeoneSerge approved these changes Mar 22, 2023

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samuela merged commit d8e1593 into NixOS:master Mar 22, 2023

ConnorBaker deleted the feat/magma-split-out-cuda-nativeBuildInputs branch March 22, 2023 04:29

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