python3Packages.myst parser 0.19.1

doc/languages-frameworks/gnome.section.md

@@ -116,10 +116,6 @@ For convenience, it also adds `dconf.lib` for a GIO module implementing a GSetti
 
 - []{#ssec-gnome-hooks-gobject-introspection} `gobject-introspection` setup hook populates `GI_TYPELIB_PATH` variable with `lib/girepository-1.0` directories of dependencies, which is then added to wrapper by `wrapGAppsHook`. It also adds `share` directories of dependencies to `XDG_DATA_DIRS`, which is intended to promote GIR files but it also [pollutes the closures](https://github.com/NixOS/nixpkgs/issues/32790) of packages using `wrapGAppsHook`.
 
-  ::: {.warning}
-  The setup hook [currently](https://github.com/NixOS/nixpkgs/issues/56943) does not work in expressions with `strictDeps` enabled, like Python packages. In those cases, you will need to disable it with `strictDeps = false;`.
-  :::
-
 - []{#ssec-gnome-hooks-gst-grl-plugins} Setup hooks of `gst_all_1.gstreamer` and `grilo` will populate the `GST_PLUGIN_SYSTEM_PATH_1_0` and `GRL_PLUGIN_PATH` variables, respectively, which will then be added to the wrapper by `wrapGAppsHook`.
 
 You can also pass additional arguments to `makeWrapper` using `gappsWrapperArgs` in `preFixup` hook:

nixos/modules/system/boot/systemd/initrd.nix

@@ -158,6 +158,16 @@ in {
       '';
     };
 
+    managerEnvironment = mkOption {
+      type = with types; attrsOf (nullOr (oneOf [ str path package ]));
+      default = {};
+      example = { SYSTEMD_LOG_LEVEL = "debug"; };
+      description = lib.mdDoc ''
+        Environment variables of PID 1. These variables are
+        *not* passed to started units.
+      '';
+    };
+
     contents = mkOption {
       description = lib.mdDoc "Set of files that have to be linked into the initrd";
       example = literalExpression ''
@@ -355,8 +365,11 @@ in {
         less = "${pkgs.less}/bin/less";
         mount = "${cfg.package.util-linux}/bin/mount";
         umount = "${cfg.package.util-linux}/bin/umount";
+        fsck = "${cfg.package.util-linux}/bin/fsck";
       };
 
+      managerEnvironment.PATH = "/bin:/sbin";
+
       contents = {
         "/init".source = "${cfg.package}/lib/systemd/systemd";
         "/etc/systemd/system".source = stage1Units;
@@ -365,6 +378,7 @@ in {
           [Manager]
           DefaultEnvironment=PATH=/bin:/sbin ${optionalString (isBool cfg.emergencyAccess && cfg.emergencyAccess) "SYSTEMD_SULOGIN_FORCE=1"}
           ${cfg.extraConfig}
+          ManagerEnvironment=${lib.concatStringsSep " " (lib.mapAttrsToList (n: v: "${n}=${lib.escapeShellArg v}") cfg.managerEnvironment)}
         '';
 
         "/lib/modules".source = "${modulesClosure}/lib/modules";
@@ -444,21 +458,6 @@ in {
                      (v: let n = escapeSystemdPath v.where;
                          in nameValuePair "${n}.automount" (automountToUnit n v)) cfg.automounts);
 
-      # The unit in /run/systemd/generator shadows the unit in
-      # /etc/systemd/system, but will still apply drop-ins from
-      # /etc/systemd/system/foo.service.d/
-      #
-      # We need IgnoreOnIsolate, otherwise the Requires dependency of
-      # a mount unit on its makefs unit causes it to be unmounted when
-      # we isolate for switch-root. Use a dummy package so that
-      # generateUnits will generate drop-ins instead of unit files.
-      packages = [(pkgs.runCommand "dummy" {} ''
-        mkdir -p $out/etc/systemd/system
-        touch $out/etc/systemd/system/systemd-{makefs,growfs}@.service
-      '')];
-      services."systemd-makefs@" = lib.mkIf needMakefs { unitConfig.IgnoreOnIsolate = true; };
-      services."systemd-growfs@" = lib.mkIf needGrowfs { unitConfig.IgnoreOnIsolate = true; };
-
       # make sure all the /dev nodes are set up
       services.systemd-tmpfiles-setup-dev.wantedBy = ["sysinit.target"];
 

nixos/modules/tasks/filesystems.nix

@@ -140,7 +140,10 @@ let
         else if config.fsType == "reiserfs" then "-q"
         else null;
     in {
-      options = mkIf config.autoResize [ "x-nixos.autoresize" ];
+      options = mkMerge [
+        (mkIf config.autoResize [ "x-nixos.autoresize" ])
+        (mkIf (utils.fsNeededForBoot config) [ "x-initrd.mount" ])
+      ];
       formatOptions = mkIf (defaultFormatOptions != null) (mkDefault defaultFormatOptions);
     };
 
@@ -155,27 +158,54 @@ let
 
   makeFstabEntries =
     let
-      fsToSkipCheck = [ "none" "bindfs" "btrfs" "zfs" "tmpfs" "nfs" "nfs4" "vboxsf" "glusterfs" "apfs" "9p" "cifs" "prl_fs" "vmhgfs" ];
+      fsToSkipCheck = [
+        "none"
+        "auto"
+        "overlay"
+        "iso9660"
+        "bindfs"
+        "udf"
+        "btrfs"
+        "zfs"
+        "tmpfs"
+        "bcachefs"
+        "nfs"
+        "nfs4"
+        "nilfs2"
+        "vboxsf"
+        "squashfs"
+        "glusterfs"
+        "apfs"
+        "9p"
+        "cifs"
+        "prl_fs"
+        "vmhgfs"
+      ] ++ lib.optionals (!config.boot.initrd.checkJournalingFS) [
+        "ext3"
+        "ext4"
+        "reiserfs"
+        "xfs"
+        "jfs"
+        "f2fs"
+      ];
       isBindMount = fs: builtins.elem "bind" fs.options;
       skipCheck = fs: fs.noCheck || fs.device == "none" || builtins.elem fs.fsType fsToSkipCheck || isBindMount fs;
       # https://wiki.archlinux.org/index.php/fstab#Filepath_spaces
       escape = string: builtins.replaceStrings [ " " "\t" ] [ "\\040" "\\011" ] string;
-    in fstabFileSystems: { rootPrefix ? "", excludeChecks ? false, extraOpts ? (fs: []) }: concatMapStrings (fs:
+    in fstabFileSystems: { rootPrefix ? "", extraOpts ? (fs: []) }: concatMapStrings (fs:
       (optionalString (isBindMount fs) (escape rootPrefix))
       + (if fs.device != null then escape fs.device
          else if fs.label != null then "/dev/disk/by-label/${escape fs.label}"
          else throw "No device specified for mount point ‘${fs.mountPoint}’.")
-      + " " + escape (rootPrefix + fs.mountPoint)
+      + " " + escape fs.mountPoint
       + " " + fs.fsType
       + " " + escape (builtins.concatStringsSep "," (fs.options ++ (extraOpts fs)))
-      + " " + (optionalString (!excludeChecks)
-        ("0 " + (if skipCheck fs then "0" else if fs.mountPoint == "/" then "1" else "2")))
+      + " 0 " + (if skipCheck fs then "0" else if fs.mountPoint == "/" then "1" else "2")
       + "\n"
     ) fstabFileSystems;
 
     initrdFstab = pkgs.writeText "initrd-fstab" (makeFstabEntries (filter utils.fsNeededForBoot fileSystems) {
       rootPrefix = "/sysroot";
-      excludeChecks = true;
       extraOpts = fs:
         (optional fs.autoResize "x-systemd.growfs")
         ++ (optional fs.autoFormat "x-systemd.makefs");
@@ -328,7 +358,9 @@ in
         )}
       '';
 
-    boot.initrd.systemd.contents."/etc/fstab".source = initrdFstab;
+    boot.initrd.systemd.storePaths = [initrdFstab];
+    boot.initrd.systemd.managerEnvironment.SYSTEMD_SYSROOT_FSTAB = initrdFstab;
+    boot.initrd.systemd.services.initrd-parse-etc.environment.SYSTEMD_SYSROOT_FSTAB = initrdFstab;
 
     # Provide a target that pulls in all filesystems.
     systemd.targets.fs =

nixos/modules/virtualisation/qemu-vm.nix

@@ -1084,15 +1084,17 @@ in
         what = "overlay";
         type = "overlay";
         options = "lowerdir=/sysroot/nix/.ro-store,upperdir=/sysroot/nix/.rw-store/store,workdir=/sysroot/nix/.rw-store/work";
-        wantedBy = ["local-fs.target"];
-        before = ["local-fs.target"];
-        requires = ["sysroot-nix-.ro\\x2dstore.mount" "sysroot-nix-.rw\\x2dstore.mount" "rw-store.service"];
-        after = ["sysroot-nix-.ro\\x2dstore.mount" "sysroot-nix-.rw\\x2dstore.mount" "rw-store.service"];
-        unitConfig.IgnoreOnIsolate = true;
+        wantedBy = ["initrd-fs.target"];
+        before = ["initrd-fs.target"];
+        requires = ["rw-store.service"];
+        after = ["rw-store.service"];
+        unitConfig.RequiresMountsFor = "/sysroot/nix/.ro-store";
       }];
       services.rw-store = {
-        after = ["sysroot-nix-.rw\\x2dstore.mount"];
-        unitConfig.DefaultDependencies = false;
+        unitConfig = {
+          DefaultDependencies = false;
+          RequiresMountsFor = "/sysroot/nix/.rw-store";
+        };
         serviceConfig = {
           Type = "oneshot";
           ExecStart = "/bin/mkdir -p 0755 /sysroot/nix/.rw-store/store /sysroot/nix/.rw-store/work /sysroot/nix/store";

nixos/tests/all-tests.nix

@@ -235,6 +235,7 @@ in {
   freshrss-pgsql = handleTest ./freshrss-pgsql.nix {};
   frr = handleTest ./frr.nix {};
   fsck = handleTest ./fsck.nix {};
+  fsck-systemd-stage-1 = handleTest ./fsck.nix { systemdStage1 = true; };
   ft2-clone = handleTest ./ft2-clone.nix {};
   mimir = handleTest ./mimir.nix {};
   garage = handleTest ./garage {};

nixos/tests/fsck.nix

@@ -1,3 +1,9 @@
+{ system ? builtins.currentSystem
+, config ? {}
+, pkgs ? import ../.. { inherit system config; }
+, systemdStage1 ? false
+}:
+
 import ./make-test-python.nix {
   name = "fsck";
 
@@ -11,13 +17,17 @@ import ./make-test-python.nix {
         autoFormat = true;
       };
     };
+
+    boot.initrd.systemd.enable = systemdStage1;
   };
 
   testScript = ''
     machine.wait_for_unit("default.target")
 
     with subtest("root fs is fsckd"):
-        machine.succeed("journalctl -b | grep 'fsck.ext4.*/dev/vda'")
+        machine.succeed("journalctl -b | grep '${if systemdStage1
+          then "fsck.*vda.*clean"
+          else "fsck.ext4.*/dev/vda"}'")
 
     with subtest("mnt fs is fsckd"):
         machine.succeed("journalctl -b | grep 'fsck.*/dev/vdb.*clean'")

nixos/tests/openldap.nix

@@ -118,7 +118,7 @@ in {
     };
   };
   testScript = { nodes, ... }: let
-    specializations = "${nodes.machine.config.system.build.toplevel}/specialisation";
+    specializations = "${nodes.machine.system.build.toplevel}/specialisation";
     changeRootPw = ''
       dn: olcDatabase={1}mdb,cn=config
       changetype: modify

pkgs/applications/audio/blanket/default.nix

@@ -31,13 +31,13 @@ python3Packages.buildPythonApplication rec {
     pkg-config
     wrapGAppsHook4
     desktop-file-utils
+    gobject-introspection
   ];
 
   buildInputs = [
     glib
     gtk4
     libadwaita
-    gobject-introspection
     gst_all_1.gstreamer
     gst_all_1.gst-plugins-base
     gst_all_1.gst-plugins-good
@@ -48,9 +48,6 @@ python3Packages.buildPythonApplication rec {
     pygobject3
   ];
 
-  # Broken with gobject-introspection setup hook
-  # https://github.com/NixOS/nixpkgs/issues/56943
-  strictDeps = false;
   format = "other";
 
   postPatch = ''

pkgs/applications/audio/cozy/default.nix

@@ -24,11 +24,6 @@ python3Packages.buildPythonApplication rec {
   pname = "cozy";
   version = "1.2.1";
 
-  # Temporary fix
-  # See https://github.com/NixOS/nixpkgs/issues/57029
-  # and https://github.com/NixOS/nixpkgs/issues/56943
-  strictDeps = false;
-
   src = fetchFromGitHub {
     owner = "geigi";
     repo = pname;

pkgs/applications/audio/gpodder/default.nix

@@ -27,17 +27,12 @@ python3Packages.buildPythonApplication rec {
     intltool
     wrapGAppsHook
     glibcLocales
+    gobject-introspection
   ];
 
-  # as of 2021-07, the gobject-introspection setup hook does not
-  # work with `strictDeps` enabled, thus for proper `wrapGAppsHook`
-  # it needs to be disabled explicitly. https://github.com/NixOS/nixpkgs/issues/56943
-  strictDeps = false;
-
   buildInputs = [
     python3
     gtk3
-    gobject-introspection
     gnome.adwaita-icon-theme
   ];
 

pkgs/applications/audio/pulseaudio-dlna/default.nix

@@ -43,7 +43,7 @@ python3Packages.buildPythonApplication {
     notify2
     pyroute2
     pygobject3
-    PyChromecast
+    pychromecast
     lxml
     setuptools
     zeroconf

pkgs/applications/audio/sonata/default.nix

@@ -39,10 +39,6 @@ in buildPythonApplication rec {
     setuptools
   ];
 
-  # Otherwise the setup hook for gobject-introspection is not run:
-  # https://github.com/NixOS/nixpkgs/issues/56943
-  strictDeps = false;
-
   postPatch = ''
     # Remove "Local MPD" tab which is not suitable for NixOS.
     sed -i '/localmpd/d' sonata/consts.py

pkgs/applications/audio/sublime-music/default.nix

@@ -70,15 +70,11 @@ python3Packages.buildPythonApplication rec {
     requests
     semver
   ]
-  ++ lib.optional chromecastSupport PyChromecast
+  ++ lib.optional chromecastSupport pychromecast
   ++ lib.optional keyringSupport keyring
   ++ lib.optional serverSupport bottle
   ;
 
-  # hook for gobject-introspection doesn't like strictDeps
-  # https://github.com/NixOS/nixpkgs/issues/56943
-  strictDeps = false;
-
   nativeCheckInputs = with python3Packages; [
     pytest
   ];

pkgs/applications/audio/tauon/default.nix

@@ -97,7 +97,7 @@ stdenv.mkDerivation rec {
     plexapi
     pulsectl
     pycairo
-    PyChromecast
+    pychromecast
     pylast
     pygobject3
     pylyrics

pkgs/applications/blockchains/clightning/default.nix

@@ -18,7 +18,7 @@
 , zlib
 }:
 let
-  py3 = python3.withPackages (p: [ p.Mako ]);
+  py3 = python3.withPackages (p: [ p.mako ]);
 in
 stdenv.mkDerivation rec {
   pname = "clightning";

pkgs/applications/editors/rednotebook/default.nix

@@ -30,10 +30,6 @@ buildPythonApplication rec {
     "--suffix XDG_DATA_DIRS : $XDG_ICON_DIRS:$GSETTINGS_SCHEMAS_PATH"
   ];
 
-  # Until gobject-introspection in nativeBuildInputs is supported.
-  # https://github.com/NixOS/nixpkgs/issues/56943#issuecomment-472568643
-  strictDeps = false;
-
   meta = with lib; {
     homepage = "https://rednotebook.sourceforge.io/";
     changelog = "https://github.com/jendrikseipp/rednotebook/blob/v${version}/CHANGELOG.md";

pkgs/applications/finance/odoo/default.nix

@@ -130,7 +130,7 @@ in python.pkgs.buildPythonApplication rec {
     vobject
     werkzeug
     xlrd
-    XlsxWriter
+    xlsxwriter
     xlwt
     zeep
   ];

pkgs/applications/graphics/cq-editor/default.nix

@@ -22,7 +22,7 @@ mkDerivationWith python3Packages.buildPythonApplication rec {
 
   propagatedBuildInputs = with python3Packages; [
     cadquery
-    Logbook
+    logbook
     pyqt5
     pyparsing
     pyqtgraph