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Add OnePhotonSeries #523

Merged
35 changes: 35 additions & 0 deletions core/nwb.ophys.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,39 @@
groups:
- neurodata_type_def: OnePhotonSeries
neurodata_type_inc: ImageSeries
doc: Image stack recorded over time from 1-photon microscope.
attributes:
- name: pmt_gain
dtype: float32
doc: Photomultiplier gain.
required: false
- name: scan_line_rate
dtype: float32
doc: Lines imaged per second. This is also stored in /general/optophysiology but
is kept here as it is useful information for analysis, and so good to be stored
w/ the actual data.
required: false
- name: exposure_time
dtype: float32
doc: Exposure time of the sample; often the inverse of the frequency.
required: false
- name: binning
dtype: uint8
doc: Amount of pixels combined into 'bins'; could be 1, 2, 4, 8, etc.
required: false
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- name: power
dtype: float32
doc: Power of the excitation in mW, if known.
required: false
- name: intensity
dtype: float32
doc: Intensity of the excitation in mW/mm^2, if known.
required: false
links:
- name: imaging_plane
target_type: ImagingPlane
doc: Link to ImagingPlane object from which this TimeSeries data was generated.

- neurodata_type_def: TwoPhotonSeries
neurodata_type_inc: ImageSeries
doc: Image stack recorded over time from 2-photon microscope.
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4 changes: 2 additions & 2 deletions docs/format/source/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -83,9 +83,9 @@ def setup(app):
# built documents.
#
# The short X.Y version.
version = '2.5.0'
version = '2.6.0'
# The full version, including alpha/beta/rc tags.
release = '2.5.0'
release = '2.6.0-alpha'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
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9 changes: 7 additions & 2 deletions docs/format/source/format_release_notes.rst
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Expand Up @@ -3,8 +3,13 @@
Release Notes
=============

2.6.0 (Upcoming)
----------------

2.6.0-alpha (Upcoming)
----------------------

Minor changes
^^^^^^^^^^^^^
- Added OnePhotonSeries. (#523)
- ``Subject.age`` has a new optional attribute, ``reference``, which can take a value of "birth" (default) or "gestational". (#525)
- Add "in seconds" to the doc of Units.spike_times. (#530)

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