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Submodule 2.2.0
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,206 @@ | ||
| datasets: | ||
| - neurodata_type_def: NWBData | ||
| neurodata_type_inc: Data | ||
| doc: An abstract data type for a dataset. | ||
|
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| - neurodata_type_def: Image | ||
| neurodata_type_inc: NWBData | ||
| dtype: numeric | ||
| dims: | ||
| - - x | ||
| - y | ||
| - - x | ||
| - y | ||
| - r, g, b | ||
| - - x | ||
| - y | ||
| - r, g, b, a | ||
| shape: | ||
| - - null | ||
| - null | ||
| - - null | ||
| - null | ||
| - 3 | ||
| - - null | ||
| - null | ||
| - 4 | ||
| doc: An abstract data type for an image. Shape can be 2-D (x, y), or 3-D where the | ||
| third dimension can have three or four elements, e.g. (x, y, (r, g, b)) or | ||
| (x, y, (r, g, b, a)). | ||
| attributes: | ||
| - name: resolution | ||
| dtype: float32 | ||
| doc: Pixel resolution of the image, in pixels per centimeter. | ||
| required: false | ||
| - name: description | ||
| dtype: text | ||
| doc: Description of the image. | ||
| required: false | ||
|
|
||
| groups: | ||
| - neurodata_type_def: NWBContainer | ||
| neurodata_type_inc: Container | ||
| doc: An abstract data type for a generic container storing collections of data and | ||
| metadata. Base type for all data and metadata containers. | ||
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|
||
| - neurodata_type_def: NWBDataInterface | ||
| neurodata_type_inc: NWBContainer | ||
| doc: An abstract data type for a generic container storing collections of data, | ||
| as opposed to metadata. | ||
|
|
||
| - neurodata_type_def: TimeSeries | ||
| neurodata_type_inc: NWBDataInterface | ||
| doc: General purpose time series. | ||
| attributes: | ||
| - name: description | ||
| dtype: text | ||
| default_value: no description | ||
| doc: Description of the time series. | ||
| required: false | ||
| - name: comments | ||
| dtype: text | ||
| default_value: no comments | ||
| doc: Human-readable comments about the TimeSeries. This second descriptive field | ||
| can be used to store additional information, or descriptive information if the | ||
| primary description field is populated with a computer-readable string. | ||
| required: false | ||
| datasets: | ||
| - name: data | ||
| dims: | ||
| - - num_times | ||
| - - num_times | ||
| - num_DIM2 | ||
| - - num_times | ||
| - num_DIM2 | ||
| - num_DIM3 | ||
| - - num_times | ||
| - num_DIM2 | ||
| - num_DIM3 | ||
| - num_DIM4 | ||
| shape: | ||
| - - null | ||
| - - null | ||
| - null | ||
| - - null | ||
| - null | ||
| - null | ||
| - - null | ||
| - null | ||
| - null | ||
| - null | ||
| doc: Data values. Data can be in 1-D, 2-D, 3-D, or 4-D. The first dimension | ||
| should always represent time. This can also be used to store binary data | ||
| (e.g., image frames). This can also be a link to data stored in an external file. | ||
| attributes: | ||
| - name: conversion | ||
| dtype: float32 | ||
| default_value: 1.0 | ||
| doc: Scalar to multiply each element in data to convert it to the specified 'unit'. | ||
| If the data are stored in acquisition system units or other units | ||
| that require a conversion to be interpretable, multiply the data by 'conversion' | ||
| to convert the data to the specified 'unit'. e.g. if the data acquisition system | ||
| stores values in this object as signed 16-bit integers (int16 range | ||
| -32,768 to 32,767) that correspond to a 5V range (-2.5V to 2.5V), and the data | ||
| acquisition system gain is 8000X, then the 'conversion' multiplier to get from | ||
| raw data acquisition values to recorded volts is 2.5/32768/8000 = 9.5367e-9. | ||
| required: false | ||
| - name: resolution | ||
| dtype: float32 | ||
| default_value: -1.0 | ||
| doc: Smallest meaningful difference between values in data, stored in the specified | ||
| by unit, e.g., the change in value of the least significant bit, or a larger | ||
| number if signal noise is known to be present. If unknown, use -1.0. | ||
| required: false | ||
| - name: unit | ||
| dtype: text | ||
| doc: Base unit of measurement for working with the data. Actual stored values are | ||
| not necessarily stored in these units. To access the data in these units, | ||
| multiply 'data' by 'conversion'. | ||
| - name: starting_time | ||
| dtype: float64 | ||
| doc: Timestamp of the first sample in seconds. When timestamps are uniformly | ||
| spaced, the timestamp of the first sample can be specified and all subsequent | ||
| ones calculated from the sampling rate attribute. | ||
| quantity: '?' | ||
| attributes: | ||
| - name: rate | ||
| dtype: float32 | ||
| doc: Sampling rate, in Hz. | ||
| - name: unit | ||
| dtype: text | ||
| value: seconds | ||
| doc: Unit of measurement for time, which is fixed to 'seconds'. | ||
| - name: timestamps | ||
| dtype: float64 | ||
| dims: | ||
| - num_times | ||
| shape: | ||
| - null | ||
| doc: Timestamps for samples stored in data, in seconds, relative to the | ||
| common experiment master-clock stored in NWBFile.timestamps_reference_time. | ||
| quantity: '?' | ||
| attributes: | ||
| - name: interval | ||
| dtype: int32 | ||
| value: 1 | ||
| doc: Value is '1' | ||
| - name: unit | ||
| dtype: text | ||
| value: seconds | ||
| doc: Unit of measurement for timestamps, which is fixed to 'seconds'. | ||
| - name: control | ||
| dtype: uint8 | ||
| dims: | ||
| - num_times | ||
| shape: | ||
| - null | ||
| doc: Numerical labels that apply to each time point in data for the purpose of | ||
| querying and slicing data by these values. If present, the length of this | ||
| array should be the same size as the first dimension of data. | ||
| quantity: '?' | ||
| - name: control_description | ||
| dtype: text | ||
| dims: | ||
| - num_control_values | ||
| shape: | ||
| - null | ||
| doc: Description of each control value. Must be present if control is present. | ||
| If present, control_description[0] should describe time points where control == 0. | ||
| quantity: '?' | ||
| groups: | ||
| - name: sync | ||
| doc: Lab-specific time and sync information as provided directly from hardware | ||
| devices and that is necessary for aligning all acquired time information to | ||
| a common timebase. The timestamp array stores time in the common timebase. | ||
| This group will usually only be populated in TimeSeries that are | ||
| stored external to the NWB file, in files storing raw data. Once timestamp | ||
| data is calculated, the contents of 'sync' are mostly for archival purposes. | ||
| quantity: '?' | ||
|
|
||
| - neurodata_type_def: ProcessingModule | ||
| neurodata_type_inc: NWBContainer | ||
| doc: A collection of processed data. | ||
| attributes: | ||
| - name: description | ||
| dtype: text | ||
| doc: Description of this collection of processed data. | ||
| groups: | ||
| - neurodata_type_inc: NWBDataInterface | ||
| doc: Data objects stored in this collection. | ||
| quantity: '*' | ||
| - neurodata_type_inc: DynamicTable | ||
| doc: Tables stored in this collection. | ||
| quantity: '*' | ||
|
|
||
| - neurodata_type_def: Images | ||
| neurodata_type_inc: NWBDataInterface | ||
| default_name: Images | ||
| doc: A collection of images. | ||
| attributes: | ||
| - name: description | ||
| dtype: text | ||
| doc: Description of this collection of images. | ||
| datasets: | ||
| - neurodata_type_inc: Image | ||
| doc: Images stored in this collection. | ||
| quantity: '+' |
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