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Merged
merged 11 commits into from
Aug 12, 2022
Merged

For 2d plots #182

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3ad40b3
feat(interactive-plot): use gl variant for performance
sanjayankur31 Aug 10, 2022
39e791b
test(plot): add more points to test performance
sanjayankur31 Aug 10, 2022
8563506
Merge pull request #181 from NeuroML/feat/use-webgl-interactive-plot
sanjayankur31 Aug 10, 2022
b28a429
Merge branch 'feat/nml2matplotlib' into experimental
pgleeson Aug 10, 2022
2ba9c2a
Improved scaling of thickness
pgleeson Aug 10, 2022
bff3499
Improve scalebar
pgleeson Aug 11, 2022
d5fc312
Further improvements in colouring & soma drawing
pgleeson Aug 11, 2022
7e8cf01
Add support for 2d network plots
pgleeson Aug 11, 2022
f90260e
To plot cells/networks, all includes need to be findable
pgleeson Aug 11, 2022
c48feb4
Better support for setting axes to see cells
pgleeson Aug 11, 2022
00922e7
Plotting point neuron networks
pgleeson Aug 11, 2022
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2 changes: 2 additions & 0 deletions .gitignore
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Expand Up @@ -136,3 +136,5 @@ examples/results/*.dat
/examples/NET_NML2_Ex5_DetCell.net.nml

.mypy_cache/
/examples/test_data/TwoCell.net.png
/examples/test_data/Purk2M9s.png
78 changes: 78 additions & 0 deletions examples/test_data/TwoCell.net.nml
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@@ -0,0 +1,78 @@
<?xml version="1.0" encoding="UTF-8"?>
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd" id="network_ACnet2">

<notes>

Network structure (NeuroML 2beta4) for project: ACnet2 saved with neuroConstruct v1.7.1 on: 15:53:21, 02-Oct-14

Cell Group: pyramidals contains 1 cells
Cell Group: baskets contains 1 cells



</notes>


<include href="bask.cell.nml"/>
<include href="Ca_conc.nml"/>
<include href="Ca_pyr.channel.nml"/>
<include href="Kahp_pyr.channel.nml"/>
<include href="Kdr_bask.channel.nml"/>
<include href="Kdr_pyr.channel.nml"/>
<include href="LeakConductance_bask.channel.nml"/>
<include href="LeakConductance_pyr.channel.nml"/>
<include href="Na_bask.channel.nml"/>
<include href="Na_pyr.channel.nml"/>
<include href="pyr_4_sym.cell.nml"/>

<pulseGenerator id="Input_1" delay="0.1s" duration="0.5s" amplitude="6.0E-10A"/>



<pulseGenerator id="Input_0" delay="0.1s" duration="0.5s" amplitude="1.0E-10A"/>


<network id="network_ACnet2" type="networkWithTemperature" temperature="6.3 degC">



<population id="pyramidals" component="pyr_4_sym" type="populationList" size="1">

<property tag="color" value="0.796875 0.0 0.19921875"/>

<instance id="0">
<location x="400.0" y="-200.0" z="0.0"/>
</instance>
</population>

<population id="baskets" component="bask" type="populationList" size="1">

<property tag="color" value="0.0 0.3984375 0.99609375"/>

<instance id="0">
<location x="0.0" y="0.0" z="0.0"/>
</instance>
</population>



<!--There are no synaptic connections present in the network-->


<inputList id="Input_1" component="Input_1" population="pyramidals">
<input id="0" target="../pyramidals/0/pyr_4_sym" destination="synapses"/>
</inputList>



<inputList id="Input_0" component="Input_0" population="baskets">
<input id="0" target="../baskets/0/bask" destination="synapses"/>
</inputList>





</network>

</neuroml>
2 changes: 1 addition & 1 deletion pyneuroml/plot/Plot.py
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Expand Up @@ -374,7 +374,7 @@ def generate_interactive_plot(

for i in range(len(xvalues)):
fig.add_trace(
go.Scatter(
go.Scattergl(
x=xvalues[i],
y=yvalues[i],
name=labels[i],
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