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50 Open 1,923 Closed
50 Open 1,923 Closed
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Issues list

mzML file: String.trim() fails, CVParamType.getValue() is null
#2115 opened Apr 2, 2025 by jwframe28
Can never get fragger to run without memory crash
#2114 opened Apr 1, 2025 by AmandaSmythers
11
precursor mass tolerance in Da not propagated properly to fragger.params
#2113 opened Apr 1, 2025 by jayieh
@fcyu
1
DIA SpecLib Quant Phospho Crashing
#2111 opened Mar 31, 2025 by FriedLabJHU
@fcyu
3
2/3 lower # of PSMs in interact.pep.xml than in percolator output
#2107 opened Mar 28, 2025 by hollenstein
@fcyu
3
skyline document not generated in FragPipe 22, with Skyline-daily 24.1.1.449
#2104 opened Mar 27, 2025 by WeiqiangChen
@fcyu
The reason for the difference between Intermediate file and psm.tsv peptide sequence
#2098 opened Mar 23, 2025 by JWJW1
@fcyu
3
Dramatic mass recalibration required
#2094 opened Mar 20, 2025 by dtabb73
@fcyu
6
No skyline document created
#2089 opened Mar 17, 2025 by egulyas
@fcyu
DIA_SpecLib_Quant No name for protein identification Bis
#2060 opened Mar 1, 2025 by Angrist75
@fcyu
2
Unique Peptides only for Quant in FragPipe
#2051 opened Feb 25, 2025 by JohnSuberu
@fcyu
3
report2.tsv file generated instead of a report.tsv file which caused an error
#2050 opened Feb 25, 2025 by Bondada20
@fcyu
5
Exclude peptide terminus from variable modification feature request
#1989 opened Jan 20, 2025 by marhartl
@fcyu
2
Bioconda package for fragpipe last version?
#1896 opened Nov 23, 2024 by rolivella
2
Isobaric label annotation
#1895 opened Nov 22, 2024 by cutleraging
@fcyu
2
DIA_spec_diaPASEF DIANN output pg file did not contain protein name
#1831 opened Oct 16, 2024 by singhsk2622
@fcyu
2
Process 'DIA-NN: Propagate information' finished, exit code: 1
#1815 opened Oct 4, 2024 by S-Watanabe0123
@fcyu
12
Protein coverage calculation
#1810 opened Oct 2, 2024 by apsteinberg
@fcyu @anesvi
5
Combined unique peptides column is missing in combined_proteins.tsv
#1808 opened Oct 2, 2024 by SamueldelaCamaraFuentes
@fcyu
PTM Prophet error crashes run
#1781 opened Sep 13, 2024 by S-Watanabe0123
@fcyu
14
How to set a modification not C-term?
#1763 opened Aug 31, 2024 by a995752924
@fcyu
3
Can we get support for crosslinking MS?
#1738 opened Aug 20, 2024 by bluemooninvestor
Questions about searching the Pierce iRT peptides.
#1673 opened Jul 15, 2024 by vindr20
@fcyu @yangkl96
18
LFQ-phospho - sequence
#1649 opened Jun 26, 2024 by ghost
@fcyu
2
Summary table-like output for FragPipe enhancement FragPipe
#1641 opened Jun 21, 2024 by carlosg-czbiohub
@fcyu
1
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