Update Dockerfile according to the latest release.

Author: fcyu

Dockerfile

@@ -8,11 +8,12 @@ RUN apt-get -y update --fix-missing \
     && apt-get -y update \
     && apt-get -y autoremove
 
-# install mono	
+# install mono
 RUN apt-get -y install ca-certificates gnupg
 RUN gpg --homedir /tmp --no-default-keyring --keyring /usr/share/keyrings/mono-official-archive-keyring.gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys 3FA7E0328081BFF6A14DA29AA6A19B38D3D831EF
 RUN echo "deb [signed-by=/usr/share/keyrings/mono-official-archive-keyring.gpg] https://download.mono-project.com/repo/ubuntu stable-focal main" | tee /etc/apt/sources.list.d/mono-official-stable.list
 RUN apt-get -y update
+
 RUN apt-get -y install mono-devel
 
 # install dependencies
@@ -23,15 +24,15 @@ RUN apt-get -y install \
     tar \
     unzip \
     wget \
-    openjdk-11-jdk \
-	vim \
-	dotnet-runtime-6.0
-	
+    openjdk-17-jdk \
+    vim \
+    dotnet-runtime-6.0
+
 # install python packages
 RUN pip uninstall easypqp \
     && pip install git+https://github.com/Nesvilab/easypqp.git@master \
     && pip install lxml
-	
+
 # create a directory with 777 permission and set it to the work directory
 RUN mkdir /fragpipe_bin
 RUN chmod 777 /fragpipe_bin
@@ -40,12 +41,12 @@ WORKDIR /fragpipe_bin
 # create directories
 RUN mkdir tmp
 RUN chmod 777 tmp
-	
+
 # download and install fragPipe
-RUN wget https://github.com/Nesvilab/FragPipe/releases/download/21.1/FragPipe-21.1.zip -P fragPipe-21.1
-RUN unzip fragPipe-21.1/FragPipe-21.1.zip -d fragPipe-21.1
+RUN wget https://github.com/Nesvilab/FragPipe/releases/download/22.0/FragPipe-22.0.zip -P fragPipe-22.0
+RUN unzip fragPipe-22.0/FragPipe-22.0.zip -d fragPipe-22.0
 RUN chmod -R 777 /fragpipe_bin
 
 # set environment variables
-ENV JAVA_HOME /usr/lib/jvm/java-11-openjdk-amd64/
+ENV JAVA_HOME /usr/lib/jvm/java-17-openjdk-amd64/
 RUN export JAVA_HOME