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README.md

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-# PDV_For_FragerGUI
+# FP-PDV: Customized version of PDV for FragPipe.
 
+FP-PDV is a customized version of PDV for FragPipe. I changed the GUI layout, optimized the database structure, and implemented new functions fitting FragPipe results especially.
+
+## Installation
+
+The FP-PDV packages are free to download at []
+
+## Ways to run
+
+### Run in FragPipe (Recommended)
+
+The FP-PDV has already been released together with FragPipe. However, the latest version of FP-PDV can be downloaded here and updated manually in FragPipe.
+
+(1) Open the `tools` in your FragPipe folder.
+
+![image](https://user-images.githubusercontent.com/29800230/207643028-fe38991c-8f5b-42ac-8887-c15375654ab5.png)
+
+(2) Open the `FP-PDV` in the `tools` folder.
+
+![image](https://user-images.githubusercontent.com/29800230/207643466-f46ac4ce-539a-4776-b541-7f08c4a2ed9f.png)
+
+(3) Copy the latest FP-PDV package and replace the old one in the `FP-PDV` folder.
+
+![image](https://user-images.githubusercontent.com/29800230/207643850-8514ac00-ca6c-4173-80eb-b829798fc49d.png)
+
+### Run in CMD
+
+If you want to run FP-PDV outside the FragPipe, you can run it by command line.
+
+```sh
+ $ java -jar FP-PDV-1.0.5.jar fragpipe_result_folder 6
+```
+
+The first parameter is the absolute path of your FragPipe result folder. The second parameter is the number of threads you want to use.