Skip to content

updated link to pubmed #8402

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 2 commits into from
Feb 13, 2024
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 4 additions & 4 deletions tutorials/nlp/SpellMapper_English_ASR_Customization.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -214,7 +214,7 @@
"source": [
"## Download data\n",
"\n",
"File `pubmed23n0009.xml` taken from public ftp server of https://www.ncbi.nlm.nih.gov/pmc/ contains information about 5593 medical papers, from which we extract only their abstracts. We will feed sentences from there to TTS + ASR to get initial ASR results.\n",
"File `pubmed24n0009.xml` taken from public ftp server of https://www.ncbi.nlm.nih.gov/pmc/ contains information about 5593 medical papers, from which we extract only their abstracts. We will feed sentences from there to TTS + ASR to get initial ASR results.\n",
"\n",
"File `wordlist.txt` contains 100k **single-word** medical terms.\n",
"\n",
Expand All @@ -231,9 +231,9 @@
},
"outputs": [],
"source": [
"!wget https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/pubmed23n0009.xml.gz\n",
"!gunzip pubmed23n0009.xml.gz\n",
"!grep \"AbstractText\" pubmed23n0009.xml > abstract.txt\n",
"!wget https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/pubmed24n0009.xml.gz\n",
"!gunzip pubmed24n0009.xml.gz\n",
"!grep \"AbstractText\" pubmed24n0009.xml > abstract.txt\n",
"\n",
"!wget https://raw.githubusercontent.com/McGill-NLP/medal/master/toy_data/valid_adam.txt\n",
"!wget https://raw.githubusercontent.com/glutanimate/wordlist-medicalterms-en/master/wordlist.txt\n",
Expand Down