Feature/rrfs dev2

.gitignore

@@ -0,0 +1,2 @@
+fix
+ush/config.sh

jobs/JREGIONAL_NOVARCLD

@@ -0,0 +1,98 @@
+#!/bin/bash
+
+#-----------------------------------------------------------------------
+#
+# This J-JOB script runs the standalone No-Var Cloud Analysis
+#      for the FV3-LAM model
+#
+#-----------------------------------------------------------------------
+
+#
+#-----------------------------------------------------------------------
+#
+# Source the variable definitions file and the bash utility functions.
+#
+#-----------------------------------------------------------------------
+#
+. ${GLOBAL_VAR_DEFNS_FP}
+. $USHDIR/source_util_funcs.sh
+#
+#-----------------------------------------------------------------------
+#
+# Save current shell options (in a global array).  Then set new options
+# for this script/function.
+#
+#-----------------------------------------------------------------------
+#
+{ save_shell_opts; set -u +x; } > /dev/null 2>&1
+#
+#-----------------------------------------------------------------------
+#
+# Get the full path to the file in which this script/function is located 
+# (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in
+# which the file is located (scrfunc_dir).
+#
+#-----------------------------------------------------------------------
+#
+scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fn=$( basename "${scrfunc_fp}" )
+scrfunc_dir=$( dirname "${scrfunc_fp}" )
+#
+#-----------------------------------------------------------------------
+#
+# Print message indicating entry into script.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Entering script:  \"${scrfunc_fn}\"
+In directory:     \"${scrfunc_dir}\"
+
+This is the J-job script for the task that runs a standalone No-Var cloud
+analysis with FV3 for the specified cycle.
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Create the working directory under the cycle directory.
+#
+#-----------------------------------------------------------------------
+#
+WORKDIR=${CYCLE_DIR}/novar_cldanl
+rm -fr ${WORKDIR}
+mkdir_vrfy -p ${WORKDIR}
+#
+#-----------------------------------------------------------------------
+#
+# Call the ex-script for this J-job and pass to it the necessary varia-
+# bles.
+#
+#-----------------------------------------------------------------------
+#
+$SCRIPTSDIR/exregional_novarcldanl.sh \
+  CYCLE_DIR="${CYCLE_DIR}" WORKDIR="${WORKDIR}" || \
+print_err_msg_exit "\
+Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
+#
+#-----------------------------------------------------------------------
+#
+# Print exit message.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Exiting script:  \"${scrfunc_fn}\"
+In directory:    \"${scrfunc_dir}\"
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Restore the shell options saved at the beginning of this script/func-
+# tion.
+#
+#-----------------------------------------------------------------------
+#
+{ restore_shell_opts; } > /dev/null 2>&1
+

jobs/JREGIONAL_PROCESS_BUFR

@@ -0,0 +1,99 @@
+#!/bin/bash
+
+#
+#-----------------------------------------------------------------------
+#
+# This J-JOB script runs the preprocess of BUFR files
+#      for the FV3-LAM model
+#
+#-----------------------------------------------------------------------
+#
+#
+#-----------------------------------------------------------------------
+#
+# Source the variable definitions file and the bash utility functions.
+#
+#-----------------------------------------------------------------------
+#
+. ${GLOBAL_VAR_DEFNS_FP}
+. $USHDIR/source_util_funcs.sh
+#
+#-----------------------------------------------------------------------
+#
+# Save current shell options (in a global array).  Then set new options
+# for this script/function.
+#
+#-----------------------------------------------------------------------
+#
+{ save_shell_opts; set -u +x; } > /dev/null 2>&1
+#
+#-----------------------------------------------------------------------
+#
+# Get the full path to the file in which this script/function is located 
+# (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in
+# which the file is located (scrfunc_dir).
+#
+#-----------------------------------------------------------------------
+#
+scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fn=$( basename "${scrfunc_fp}" )
+scrfunc_dir=$( dirname "${scrfunc_fp}" )
+#
+#-----------------------------------------------------------------------
+#
+# Print message indicating entry into script.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Entering script:  \"${scrfunc_fn}\"
+In directory:     \"${scrfunc_dir}\"
+
+This is the J-job script for the task that runs a BUFR preprocess for 
+the specified cycle.
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Create the working directory under the cycle directory.
+#
+#-----------------------------------------------------------------------
+#
+WORKDIR=${CYCLE_DIR}/process_bufr
+rm -fr ${WORKDIR}
+mkdir_vrfy -p ${WORKDIR}
+#
+#-----------------------------------------------------------------------
+#
+# Call the ex-script for this J-job and pass to it the necessary varia-
+# bles.
+#
+#-----------------------------------------------------------------------
+#
+$SCRIPTSDIR/exregional_process_bufr.sh \
+  CYCLE_DIR="${CYCLE_DIR}" WORKDIR="${WORKDIR}" || \
+print_err_msg_exit "\
+Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
+#
+#-----------------------------------------------------------------------
+#
+# Print exit message.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Exiting script:  \"${scrfunc_fn}\"
+In directory:    \"${scrfunc_dir}\"
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Restore the shell options saved at the beginning of this script/func-
+# tion.
+#
+#-----------------------------------------------------------------------
+#
+{ restore_shell_opts; } > /dev/null 2>&1
+

jobs/JREGIONAL_PROCESS_LIGHTNING

@@ -0,0 +1,99 @@
+#!/bin/bash
+
+#
+#-----------------------------------------------------------------------
+#
+# This J-JOB script runs the NetCDF ligthning observation preprocess 
+#      for the FV3-LAM model
+#
+#-----------------------------------------------------------------------
+#
+#
+#-----------------------------------------------------------------------
+#
+# Source the variable definitions file and the bash utility functions.
+#
+#-----------------------------------------------------------------------
+#
+. ${GLOBAL_VAR_DEFNS_FP}
+. $USHDIR/source_util_funcs.sh
+#
+#-----------------------------------------------------------------------
+#
+# Save current shell options (in a global array).  Then set new options
+# for this script/function.
+#
+#-----------------------------------------------------------------------
+#
+{ save_shell_opts; set -u +x; } > /dev/null 2>&1
+#
+#-----------------------------------------------------------------------
+#
+# Get the full path to the file in which this script/function is located 
+# (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in
+# which the file is located (scrfunc_dir).
+#
+#-----------------------------------------------------------------------
+#
+scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fn=$( basename "${scrfunc_fp}" )
+scrfunc_dir=$( dirname "${scrfunc_fp}" )
+#
+#-----------------------------------------------------------------------
+#
+# Print message indicating entry into script.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Entering script:  \"${scrfunc_fn}\"
+In directory:     \"${scrfunc_dir}\"
+
+This is the J-job script for the task that runs a lightning preprocess for 
+the specified cycle.
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Create the working directory under the cycle directory.
+#
+#-----------------------------------------------------------------------
+#
+WORKDIR=${CYCLE_DIR}/process_lightning
+rm -fr ${WORKDIR}
+mkdir_vrfy -p ${WORKDIR}
+#
+#-----------------------------------------------------------------------
+#
+# Call the ex-script for this J-job and pass to it the necessary varia-
+# bles.
+#
+#-----------------------------------------------------------------------
+#
+$SCRIPTSDIR/exregional_process_lightning.sh \
+  CYCLE_DIR="${CYCLE_DIR}" WORKDIR="${WORKDIR}" || \
+print_err_msg_exit "\
+Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
+#
+#-----------------------------------------------------------------------
+#
+# Print exit message.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Exiting script:  \"${scrfunc_fn}\"
+In directory:    \"${scrfunc_dir}\"
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Restore the shell options saved at the beginning of this script/func-
+# tion.
+#
+#-----------------------------------------------------------------------
+#
+{ restore_shell_opts; } > /dev/null 2>&1
+

jobs/JREGIONAL_PROCESS_RADARREF

@@ -1,11 +1,14 @@
 #!/bin/bash
 
+
+#
 #-----------------------------------------------------------------------
 #
 # This J-JOB script runs the radar reflectivity preprocess 
 #      for the FV3-LAM model
 #
 #-----------------------------------------------------------------------
+#
 
 #
 #-----------------------------------------------------------------------
@@ -60,9 +63,7 @@ preprocess with FV3 for the specified cycle.
 #-----------------------------------------------------------------------
 #
 WORKDIR=${CYCLE_DIR}/PROCESS_RADARREF
-if [ -r ${WORKDIR} ]; then
-  rm -fr ${WORKDIR}
-fi
+rm -fr ${WORKDIR}
 mkdir_vrfy -p ${WORKDIR}
 #
 #-----------------------------------------------------------------------

jobs/JREGIONAL_REFL2TTEN

@@ -60,9 +60,7 @@ the specified cycle.
 #-----------------------------------------------------------------------
 #
 WORKDIR=${CYCLE_DIR}/REFL2TTEN
-if [ -r ${WORKDIR} ]; then
-  rm -fr ${WORKDIR}
-fi
+rm -fr ${WORKDIR}
 mkdir_vrfy -p ${WORKDIR}
 #
 #-----------------------------------------------------------------------

jobs/JREGIONAL_RUN_ANAL

@@ -61,9 +61,7 @@ the specified cycle.
 #-----------------------------------------------------------------------
 #
 ANALWORKDIR=${CYCLE_DIR}/ANAL_GSI
-if [ -r ${ANALWORKDIR} ]; then
-  rm -fr ${ANALWORKDIR}
-fi
+rm -fr ${ANALWORKDIR}
 mkdir_vrfy -p ${ANALWORKDIR}
 #
 #-----------------------------------------------------------------------