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Update location of GSI repository in Externals.cfg.#1

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danielabdi-noaa merged 1 commit into
feature/gfsv16b-cloudfrom
feature/update-externals
Jun 10, 2020
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Update location of GSI repository in Externals.cfg.#1
danielabdi-noaa merged 1 commit into
feature/gfsv16b-cloudfrom
feature/update-externals

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@christopherwharrop-noaa
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Update tags in Externals.cfg to be consistent with sorc/checkout.sh

Update tags in Externals.cfg to be consistent with sorc/checkout.sh
@christopherwharrop-noaa
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@danielabdi-noaa / @markgovett - I have specified both of you as reviewers for this PR. You should have gotten an email from GitHub notifying you of that. I am writing this comment in the PR interface using the @ symbol to directly address you for correspondence regarding this PR. You should also get an email notifying you of this comment. You can respond in Github (recommended) or via email (not recommended). I need you to review this PR and either approve it, or request changes, or reject it. I can merge after 1 approval.

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Testing approval

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@danielabdi-noaa - Thank you for your approval. I can now merge. Note that "Squash and Merge" is the preferred merge method. Also note that a "Remove Branch" button will appear after you click the green "Merge pull request" button to remove the branch you just merged. ALWAYS remove the branch you just merged to keep the repository clean. Please go ahead and try merging this.

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@danielabdi-noaa - Also make sure you actually look at the PR and give it a thorough review to make sure it looks ok. Also, since we don't have continuous integration set up, you should normally check out the branch the PR wants to merge and test it to make sure it works before approving. Never just blindly approve a PR; look at the changes and be critical of them.

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Chris, I am not authorized to merge pull request, the button is disable for me.

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@danielabdi-noaa - Try refreshing the page and see if it's available now.

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@danielabdi-noaa - BTW, if you want to address me directly in a comment, you can type "@" and it will bring up a list of users and you can select mine, and I'll get notified directly.

@danielabdi-noaa danielabdi-noaa merged commit d60039d into feature/gfsv16b-cloud Jun 10, 2020
@danielabdi-noaa danielabdi-noaa deleted the feature/update-externals branch June 10, 2020 14:28
christopherwharrop-noaa pushed a commit that referenced this pull request Jun 11, 2020
danielabdi-noaa pushed a commit that referenced this pull request Jun 11, 2020
* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
christopherwharrop-noaa added a commit that referenced this pull request Jun 15, 2020
* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
christopherwharrop-noaa added a commit that referenced this pull request Jun 15, 2020
* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Adapting wavepostsbs for running on Hera

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

* Update exwave_post_sbs.sh

Removing obsolete nm variable entries

* Issue #1 - update Externals.cfg to match updates to checkout.sh

Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
christopherwharrop-noaa added a commit that referenced this pull request Jun 16, 2020
* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Adapting wavepostsbs for running on Hera

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

* Update exwave_post_sbs.sh

Removing obsolete nm variable entries

* Issue #1 - update Externals.cfg to match updates to checkout.sh

* modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

* Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
christopherwharrop-noaa pushed a commit that referenced this pull request Jul 9, 2020
 * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

 * add ensemble resolution analysis to HPSS gdas tarball

 * allow variable range to be externally set in run_gfsmos_master scripts
danielabdi-noaa pushed a commit that referenced this pull request Jul 9, 2020
* First draft to add chgresfcst to rocoto workflow

* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Commit changes from debugging addition of chgresfcst on hera

* add checkout.sh to test on Dell

* Adapting wavepostsbs for running on Hera

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

* Update exwave_post_sbs.sh

Removing obsolete nm variable entries

* Issue #1 - update Externals.cfg to match updates to checkout.sh

* Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

* modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

* Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

* update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

* modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

* Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

* Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

* Update config.resources

Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

* Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

* modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
   and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

1) Inline POST Issues NOAA-EMC#136 and $142
   * Update ceiling height calculation for global FV3.
   * add low,middle,high instantaneous cloud fraction
   * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
   * fix a bug in initializing DBZI
   * output mixed layer CAPE/CIN
   * remove simulated GOES-12 brightness temperature.
   * change the names of time averaged low/mid/high cloud fractions in grib2 files
     from "TCDC" to "LCDC/MCDC/HCDC", respectively.

2) Model Issue NOAA-EMC#152
   * update in-line post control files
   * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

* Merge updates from EMC.

* Update README.md

Remove use/mention of manage_externals until checkout.sh is retired.

* fix for exiting properly with error for wave prep/init scripts

* Issue #1:  HPSS archive and MOS script changes

 * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

 * add ensemble resolution analysis to HPSS gdas tarball

 * allow variable range to be externally set in run_gfsmos_master scripts

* modified:   config.vrfy to point a different syndat directory on Hera
       export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
       export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

* corrected a typo in  hpssarch_gen.sh
-     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
+     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

* modified:   config.vrfy to add
    elif [ $machine = "HERA" ] ; then
        export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

* modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
    add WW3 break-point restart capability and clean up forecast script.

* further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

* Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

* Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

* modified:   checkout.sh to checkout model tag GFS.v16.0.9

 1.   WW3 update: write all restart files in a sub-directory restart_wave
 2.   Port production/GFS.v16 to Orion (NOAA-EMC#129)
    * Update FV3 submodule
    * Update NEMS submodule
    * Add 'ulimit -s unlimited' to Orion job card template
    * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
    * Update modulefiles/orion.intel/fv3
    * Update regression test configuration on Orion (for gfs_v16)
    * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
    * Update NEMS submodule (point to NOAA-EMC/NEMS)

Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
christopherwharrop-noaa added a commit that referenced this pull request Jul 13, 2020
* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Add makefiles for a linux target.

* Make necessary source code changes for linux target.

* Merge linux setup files for gnu/intel.

* Modify GEMPAK path.

* Add missing module files.

* Set netcdf include directory env. variable.

* Added contents of cloud work to repository.

* Temporary fix for intel on jenkins by turning of openmp.

* Revert back to copying global-workflow from host.

* Fixes of ufs_utils with intel.

* remove temp image if it exists before building

* - Add pipefail to shell scripts to exit if a piped command fails
- Add MAKEFLAGS to set parallel job builds for build_esmf.sh and
  build_netcd.sh

* added test to verify build of fv3gfs

* Copy fv3gfs.fd from host.

* Checkout gfs automatically if not present.

* Remove bug in fv3nc2nemsio makefile.

* Update GSI patch.

* Clone global-workflow from container using secrets.

* Bug fix with GSI cloning on jenkins.

* Fix GSI for intel patch.

* Update FV3 patch.

Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: Jebb Q. Stewart <jebb.q.stewart@noaa.gov>
Co-authored-by: Christopher Harrop <Christopher.W.Harrop@noaa.gov>
christopherwharrop-noaa pushed a commit that referenced this pull request Aug 20, 2020
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
Merge branch 'develop' at revision 3ed9267 into feature/gfsv16b
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
 * scripts/run_gfsmos_master.sh.dell - update MOS script to point at MDL gfsmos
 * sorc/checkout.sh - check out new fv3gfs branch and UPP tag
 * ush/hpssarch_gen.sh - add loginc to gdas and gfs tarballs
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
 * jobs/rocoto/vrfy.sh - set verification date based on VBACKUP_FITS

 * parm/config/config.anal - correct ozinfo typo, enclose realtime settings in REALTIME block

 * parm/config/config.resources - set npe_node_post for WCOSS_DELL_P3, reduce C768 eobs npe_eobs

 * parm/config/config.vrfy - add VBACKUP_FITS
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
 * sorc/checkout.sh - check out ProdGSI tag gfsda.v16.0.0

 * parm/config/config.anal - remove REALTIME=NO section since not needed
christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020
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2 participants