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Merged
adcroft merged 2 commits into from
Jan 29, 2016
Merged

User/nnz/fix eddy kinetic energy script #71

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0c51a85
Fix the analysis script to use ocean_5daily.nc
nikizadehgfdl Jan 20, 2016
6470d1b
Use full grid ocean_static.nc
nikizadehgfdl Jan 29, 2016
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4 changes: 2 additions & 2 deletions tools/analysis/EddyKineticEnergy.py
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@
parser = argparse.ArgumentParser(description='''Script for plotting annual-average eddy kinetic energy.''')
parser.add_argument('annual_file', type=str, help='''Daily file containing ssu,ssv.''')
parser.add_argument('-l','--label', type=str, default='', help='''Label to add to the plot.''')
parser.add_argument('-o','--outdir', type=str, default='.', help='''Directory in which to place plots.''')
parser.add_argument('-o','--outfile', type=str, default='.', help='''Output file plot.''')
parser.add_argument('-g','--gridspec', type=str,
help='''File containing variables geolon,geolat,wet,areacello. Usually the ocean_static.nc from diag_table.''')
cmdLineArgs = parser.parse_args()
Expand Down Expand Up @@ -56,5 +56,5 @@
m6plot.xyplot( eke, x, y, area=area,
suptitle=rootGroup.title+' '+cmdLineArgs.label, title=plot_title,
# clim=ci, logscale=True,
save=cmdLineArgs.outdir+'/EKE_mean.png')
save=cmdLineArgs.outfile )

7 changes: 4 additions & 3 deletions tools/analysis/MOM6_refineDiag.csh
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Expand Up @@ -94,9 +94,10 @@ set script_dir=${out_dir}/mom6/tools/analysis
echo '==Run some example annual scripts. These are not reviewed by scientists.'

echo '====annual mean Eddy Kinetic Energy======'
mkdir -p $out_dir/refineDiag_ocean_annual/ocean_${yr1}/EddyKineticEnergy

$script_dir/EddyKineticEnergy.py -g $yr1.ocean_static.nc -o $out_dir/refineDiag_ocean_annual/ocean_${yr1}/EddyKineticEnergy -l ${yr1} $yr1.ocean_daily.nc
mkdir -p $out_dir/refineDiag_ocean_annual/EddyKineticEnergy
set ocean_static_file = $yr1.ocean_static.nc
if ( -e $yr1.ocean_static_no_mask_table.nc ) set ocean_static_file = $yr1.ocean_static_no_mask_table.nc
$script_dir/EddyKineticEnergy.py -g $ocean_static_file -o $out_dir/refineDiag_ocean_annual/EddyKineticEnergy/EKE_mean_${yr1}.png -l ${yr1} $yr1.ocean_5daily.nc
$script_dir/calc_variance.py zos $yr1.ocean_5daily.nc $refineDiagDir/$yr1.ocean_month_refined.nc

echo " ---------- end yearly analysis ---------- "
Expand Down