(*)Revise offline tracer test parameters

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/MOM_override_offline

@@ -1,33 +1,20 @@
 ! Blank file in which we can put "overrides" for parameters
-NK = 50
 #override USE_REGRIDDING = True
 #override BULKMIXEDLAYER = False
 #override COORD_FILE = "Layer_coord50.nc"
 #override DIABATIC_FIRST = False
+#override PEN_SW_NBANDS = 0
 #override REGRID_TIME_SCALE = 0.0
 
-USE_STORED_SLOPES = True
-USE_NEUTRAL_DIFFUSION = True
-SIMPLE_TKE_TO_KD = True
-REGRIDDING_COORDINATE_MODE = "Z*"
-ALE_COORDINATE_CONFIG = "FILE:vgrid.nc,dz"
-HMIX_FIXED = 0.5
-CFL_TRUNCATE_RAMP_TIME = 7200.
-Z_INIT_ALE_REMAPPING = True
-ENERGETICS_SFC_PBL = True
-
-USE_ADVECTION_TEST_TRACER = True
-ADVECTION_TEST_X_ORIGIN = 19.5
-ADVECTION_TEST_Y_ORIGIN = 60.5
-ADVECTION_TEST_X_WIDTH = 1.0
-ADVECTION_TEST_Y_WIDTH = 1.0
-
 ! Related to offline tracer transport
 OFFLINE_TRACER_MODE = True
 OFFLINEDIR = "ONLINE/"
 OFF_SUM_FILE = "00010101.off_sum_1day.nc"
 OFF_SNAP_FILE = "00010101.off_snap_1day.nc"
+OFF_SURF_FILE = "00010101.off_sum_1day.nc"
+OFF_MEAN_FILE = "00010101.off_avg_1day.nc"
 START_INDEX = 1
-DT_OFFLINE = 86400
+DT_OFFLINE = 86400.0
+DT_OFFLINE_VERTICAL = 86400.0
 NUM_OFF_ITER = 30
 NUMTIME = 5

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/MOM_override_online

@@ -5,16 +5,8 @@ NK = 50
 #override COORD_FILE = "Layer_coord50.nc"
 #override DIABATIC_FIRST = False
 #override REGRID_TIME_SCALE = 0.0
-USE_STORED_SLOPES = True
-USE_NEUTRAL_DIFFUSION = True
-SIMPLE_TKE_TO_KD = True
-REGRIDDING_COORDINATE_MODE = "Z*"
-ALE_COORDINATE_CONFIG = "FILE:vgrid.nc,dz"
-HMIX_FIXED = 0.5
-CFL_TRUNCATE_RAMP_TIME = 7200.
-Z_INIT_ALE_REMAPPING = True
-ENERGETICS_SFC_PBL = True
 
+ALE_COORDINATE_CONFIG = "FILE:vgrid.nc,dz"
 
 USE_ADVECTION_TEST_TRACER = True
 ADVECTION_TEST_X_ORIGIN = 19.5

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/diag_table_online

@@ -4,6 +4,7 @@ GOLD_SIS
 
 "off_snap_1day",    1, "days", 1, "days", "time"
 "off_sum_1day",	    1, "days", 1, "days", "time"
+"off_avg_1day",	    1, "days", 1, "days", "time"
 
 # One day resolution
 "ocean_model","ea","ea_sum","off_sum_1day","all",sum,"none",1
@@ -18,3 +19,7 @@ GOLD_SIS
 "ocean_model","h","h_end","off_snap_1day","all",.false.,"none",1
 "ocean_model","temp","temp","off_snap_1day","all",.false.,"none",1
 "ocean_model","salt","salt","off_snap_1day","all",.false.,"none",1
+
+"ocean_model","salt","salt","off_avg_1day","all",.true.,"none",1
+"ocean_model","temp","temp","off_avg_1day","all",.true.,"none",1
+"ocean_model","Kd_interface","Kd_interface","off_avg_1day","all",.true.,"none",1

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/run_offline.sh

@@ -3,6 +3,5 @@ cp diag_table_offline diag_table
 cp input.offline.nml input.nml
 cp MOM_override_offline MOM_override
 
-
 # Run the forward model
-./MOM6_ocean_only
+mprun ./MOM6_ocean_only

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/run_online.sh

@@ -4,9 +4,10 @@ cp input.online.nml input.nml
 cp MOM_override_online MOM_override
 
 # Run the forward model
-./MOM6_coupled
+mprun ./MOM6_coupled
 
 # Make the directory where online fields will be stored and copy diagnostics
 mkdir ONLINE
 mv *off_snap* ONLINE/
 mv *off_sum* ONLINE/
+mv *off_avg* ONLINE/