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Fix the refineDiag script called from xmls for _d2 diagnostics #328

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Merged
adcroft merged 1 commit into from
Oct 28, 2020
Merged

Fix the refineDiag script called from xmls for _d2 diagnostics #328

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20 changes: 12 additions & 8 deletions tools/analysis/MOM6_refineDiag.csh
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Original file line number Diff line number Diff line change
Expand Up @@ -101,10 +101,11 @@ chmod +x $script_dir/*.py
set ocean_static_file = $yr1.ocean_static.nc
if ( -e $yr1.ocean_static_no_mask_table.nc ) set ocean_static_file = $yr1.ocean_static_no_mask_table.nc

echo '====annual mean Eddy Kinetic Energy======'
mkdir -p $out_dir/refineDiag_ocean_annual/EddyKineticEnergy
$script_dir/EddyKineticEnergy.py -g $ocean_static_file -o $out_dir/refineDiag_ocean_annual/EddyKineticEnergy/EKE_mean_${yr1}.png -l ${yr1} $yr1.ocean_daily.nc

set basin_codes_d2_file = ocean_static_d2.nc

#echo '====annual mean Eddy Kinetic Energy======'
#mkdir -p $out_dir/refineDiag_ocean_annual/EddyKineticEnergy
#$script_dir/EddyKineticEnergy.py -g $ocean_static_file -o $out_dir/refineDiag_ocean_annual/EddyKineticEnergy/EKE_mean_${yr1}.png -l ${yr1} $yr1.ocean_daily.nc

echo '==== Offline Diagnostics ===='
if ( -f $yr1.ocean_month.nc ) then
Expand All @@ -119,13 +120,16 @@ endif

echo '==== Offline Diagnostics downsampled ===='
if ( -f $yr1.ocean_month_d2.nc ) then
$script_dir/refineDiag_ocean_month.py -b basin_codes_d2.nc -r $refineDiagDir $yr1.ocean_month_d2.nc
ncatted -a associated_files,global,c,c,"areacello: $yr1.ocean_static_d2.nc" $yr1.ocean_month_d2.nc
$script_dir/refineDiag_ocean_month.py -b $basin_codes_d2_file -r $refineDiagDir $yr1.ocean_month_d2.nc
endif
if ( -f $yr1.ocean_month_z_d2.nc ) then
$script_dir/refineDiag_ocean_month_z.py -b basin_codes_d2.nc -r $refineDiagDir -s ./ $yr1.ocean_month_z_d2.nc
ncatted -a associated_files,global,c,c,"areacello: $yr1.ocean_static_d2.nc" $yr1.ocean_month_z_d2.nc
$script_dir/refineDiag_ocean_month_z.py -b $basin_codes_d2_file -r $refineDiagDir -s ./ $yr1.ocean_month_z_d2.nc
endif
if ( -f $yr1.ocean_month_rho2_d2.nc ) then
$script_dir/refineDiag_ocean_month_rho2.py -b basin_codes_d2.nc -r $refineDiagDir $yr1.ocean_month_rho2_d2.nc
ncatted -a associated_files,global,c,c,"areacello: $yr1.ocean_static_d2.nc" $yr1.ocean_month_rho2_d2.nc
$script_dir/refineDiag_ocean_month_rho2.py -b $basin_codes_d2_file -r $refineDiagDir $yr1.ocean_month_rho2_d2.nc
endif


Expand All @@ -134,7 +138,7 @@ endif

#-- Note: The calc_variance script pre-dated refineDiag efforts just prior to the start of the GFDL-CM4 DECK runs.
# Based on the diag_table, it looks like the calc_variance script is no longer needed and is now commented out.
# If it is reactivated, it should be called LAST, since it appends to the ocean_month_refined.nc file that is
# If it is reactivated, it should be called LAST, since it appends to the ocean_month_refined.nc file that is
# created first by the other scripts.

echo " ---------- end yearly analysis ---------- "
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