Corrected SIS_input_files

coupled_AM2_LM3_SIS2/Concurrent_ice_1deg/SIS_input

@@ -1,9 +1,13 @@
-! This file was written by the model and records the non-default parameters used at run-time.
+! This input file provides the adjustable run-time parameters for version 2 of the Sea Ice Simulator (SIS2).
+! Where appropriate, parameters use usually given in MKS units.
 
-! === module ice_model ===
+! This particular file is for the example in coupled_AM2_LM3_SIS2/Concurrent_ice_1deg.
+
+! This SIS_input file typically contains only the non-default values that are needed to reproduce this example.
+! A full list of parameters for this example can be found in the corresponding SIS_parameter_doc.all file
+! which is generated by the model at run-time.
 
-! === module MOM_unit_scaling ===
-! Parameters for doing unit scaling of variables.
+! === module ice_model ===
 CGRID_ICE_DYNAMICS = True       !   [Boolean] default = False
                                 ! If true, use a C-grid discretization of the sea-ice dynamics; if false use a
                                 ! B-grid discretization.
@@ -22,6 +26,16 @@ NIGLOBAL = 360                  !
 NJGLOBAL = 210                  !
                                 ! The total number of thickness grid points in the y-direction in the physical
                                 ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time.
+NIHALO = 2                      ! default = 4
+                                ! The number of halo points on each side in the x-direction.  With
+                                ! STATIC_MEMORY_ this is set as NIHALO_ in SIS2_memory.h at compile time;
+                                ! without STATIC_MEMORY_ the default is NIHALO_ in SIS2_memory.h (if defined) or
+                                ! 2.
+NJHALO = 2                      ! default = 4
+                                ! The number of halo points on each side in the y-direction.  With
+                                ! STATIC_MEMORY_ this is set as NJHALO_ in SIS2_memory.h at compile time;
+                                ! without STATIC_MEMORY_ the default is NJHALO_ in SIS2_memory.h (if defined) or
+                                ! 2.
 
 ! === module MOM_hor_index ===
 ! Sets the horizontal array index types.
@@ -110,6 +124,9 @@ SIS_CONTINUITY_SCHEME = "PCM"   ! default = "UPWIND_2D"
                                 !   PCM       - Directionally split piecewise constant
                                 !   PPM:C2PD  - Positive definite PPM with 2nd order edge values
                                 !   PPM:C2MO  - Monotonic PPM with 2nd order edge values
+INCONSISTENT_COVER_BUG = True   !   [Boolean] default = True
+                                ! If true, omit a recalculation of the fractional ice-free areal coverage after
+                                ! the adjustment of the ice categories.
 
 ! === module SIS_tracer_advect ===
 SIS_TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "UPWIND_2D"
@@ -118,6 +135,10 @@ SIS_TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "UPWIND_2D"
                                 !   PCM    - Directionally split piecewise constant
                                 !   PLM    - Piecewise Linear Method
                                 !   PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order)
+CFL_MASS_NEGLECT_BUG = True     !   [Boolean] default = True
+                                ! If true use a globally constant negligible volume in the denominator of the
+                                ! tracer advection CFL calculation, reproducing an older incorrect expression,
+                                ! rather than using a proper scaling of this negligible mass with cell area.
 
 ! === module SIS_sum_output ===
 
@@ -135,6 +156,3 @@ SIS_TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "UPWIND_2D"
 ! This module calculates the albedo and absorption profiles for shortwave radiation.
 
 ! === module MOM_file_parser ===
-DOCUMENT_FILE = "SIS_parameter_doc" ! default = "MOM_parameter_doc"
-                                ! The basename for files where run-time parameters, their settings, units and
-                                ! defaults are documented. Blank will disable all parameter documentation.

coupled_AM2_LM3_SIS2/Intersperse_ice_1deg/SIS_input

@@ -164,6 +164,3 @@ CFL_MASS_NEGLECT_BUG = True     !   [Boolean] default = True
 ! This module calculates the albedo and absorption profiles for shortwave radiation.
 
 ! === module MOM_file_parser ===
-DOCUMENT_FILE = "SIS_parameter_doc" ! default = "MOM_parameter_doc"
-                                ! The basename for files where run-time parameters, their settings, units and
-                                ! defaults are documented. Blank will disable all parameter documentation.

ocean_only/ISOMIP/rho/MOM_input

@@ -243,6 +243,10 @@ REMAP_AFTER_INITIALIZATION = False !   [Boolean] default = True
                                 ! If true, applies regridding and remapping immediately after initialization so
                                 ! that the state is ALE consistent. This is a legacy step and should not be
                                 ! needed if the initialization is consistent with the coordinate mode.
+REGRID_USE_OLD_DIRECTION = False ! [Boolean] default = True
+                                ! If true, the regridding integrates upwards from the bottom for interface
+                                ! positions, much as the main model does. If false regridding integrates
+                                ! downward, consistant with the remapping code.
 
 ! === module MOM_grid ===
 ! Parameters providing information about the lateral grid.