dev/master candidate 2017-11-19

coupled_AM2_LM3_SIS/CM2G63L/MOM_parameter_doc.layout

@@ -55,7 +55,7 @@ NJPROC = 6                      !
                                 ! STATIC_MEMORY_ this is set in MOM_memory.h at compile time.
 LAYOUT = 10, 6                  !
                                 ! The processor layout that was acutally used.
-IO_LAYOUT = 2, 2                ! default = 1
+IO_LAYOUT = 1, 1                ! default = 1
                                 ! The processor layout to be used, or 0,0 to automatically
                                 ! set the io_layout to be the same as the layout.
 NIBLOCK = 1                     ! default = 1

coupled_AM2_LM3_SIS/CM2G63L/MOM_parameter_doc.short

@@ -1,9 +1,6 @@
 ! This file was written by the model and records the non-default parameters used at run-time.
 
 ! === module MOM ===
-USE_LEGACY_SPLIT = True         !   [Boolean] default = False
-                                ! If true, use the full range of options available from
-                                ! the older GOLD-derived split time stepping code.
 THICKNESSDIFFUSE = True         !   [Boolean] default = False
                                 ! If true, interface heights are diffused with a
                                 ! coefficient of KHTH.
@@ -68,25 +65,6 @@ NJGLOBAL = 210                  !
 NK = 63                         !   [nondim]
                                 ! The number of model layers.
 
-! === module MOM_tracer_registry ===
-
-! === module MOM_EOS ===
-
-! === module MOM_restart ===
-PARALLEL_RESTARTFILES = True    !   [Boolean] default = False
-                                ! If true, each processor writes its own restart file,
-                                ! otherwise a single restart file is generated
-
-! === module MOM_tracer_flow_control ===
-USE_IDEAL_AGE_TRACER = True     !   [Boolean] default = False
-                                ! If true, use the ideal_age_example tracer package.
-USE_OCMIP2_CFC = True           !   [Boolean] default = False
-                                ! If true, use the MOM_OCMIP2_CFC tracer package.
-
-! === module ideal_age_example ===
-
-! === module MOM_OCMIP2_CFC ===
-
 ! === module MOM_fixed_initialization ===
 INPUTDIR = "INPUT"              ! default = "."
                                 ! The directory in which input files are found.
@@ -150,6 +128,22 @@ CHANNEL_CONFIG = "global_1deg"  ! default = "none"
                                 !     file - Read open face widths everywhere from a
                                 !       NetCDF file on the model grid.
 
+! === module MOM_tracer_registry ===
+
+! === module MOM_EOS ===
+
+! === module MOM_restart ===
+
+! === module MOM_tracer_flow_control ===
+USE_IDEAL_AGE_TRACER = True     !   [Boolean] default = False
+                                ! If true, use the ideal_age_example tracer package.
+USE_OCMIP2_CFC = True           !   [Boolean] default = False
+                                ! If true, use the MOM_OCMIP2_CFC tracer package.
+
+! === module ideal_age_example ===
+
+! === module MOM_OCMIP2_CFC ===
+
 ! === module MOM_coord_initialization ===
 COORD_CONFIG = "file"           !
                                 ! This specifies how layers are to be defined:
@@ -268,17 +262,6 @@ KV_BBL_MIN = 0.0                !   [m2 s-1] default = 1.0E-04
                                 ! The minimum viscosities in the bottom boundary layer.
 KV_TBL_MIN = 0.0                !   [m2 s-1] default = 1.0E-04
                                 ! The minimum viscosities in the top boundary layer.
-FLUX_BT_COUPLING = True         !   [Boolean] default = False
-                                ! If true, use mass fluxes to ensure consistency between
-                                ! the baroclinic and barotropic modes. This is only used
-                                ! if SPLIT is true.
-READJUST_BT_TRANS = True        !   [Boolean] default = False
-                                ! If true, make a barotropic adjustment to the layer
-                                ! velocities after the thermodynamic part of the step
-                                ! to ensure that the interaction between the thermodynamics
-                                ! and the continuity solver do not change the barotropic
-                                ! transport.  This is only used if FLUX_BT_COUPLING and
-                                ! SPLIT are true.
 
 ! === module MOM_continuity ===
 
@@ -294,8 +277,6 @@ ETA_TOLERANCE = 1.0E-06         !   [m] default = 3.15E-09
                                 ! tolerance for SSH is 4 times this value.  The default
                                 ! is 0.5*NK*ANGSTROM, and this should not be set less x
                                 ! than about 10^-15*MAXIMUM_DEPTH.
-CONTINUITY_CFL_LIMIT = 1.0      !   [nondim] default = 0.5
-                                ! The maximum CFL of the adjusted velocities.
 CONT_PPM_BETTER_ITER = False    !   [Boolean] default = True
                                 ! If true, stop corrective iterations using a velocity
                                 ! based criterion and only stop if the iteration is
@@ -361,41 +342,11 @@ MAXVEL = 6.0                    !   [m s-1] default = 3.0E+08
 BOUND_BT_CORRECTION = True      !   [Boolean] default = False
                                 ! If true, the corrective pseudo mass-fluxes into the
                                 ! barotropic solver are limited to values that require
-                                ! less than 0.1*MAXVEL to be accommodated.
-USE_BT_CONT_TYPE = False        !   [Boolean] default = True
-                                ! If true, use a structure with elements that describe
-                                ! effective face areas from the summed continuity solver
-                                ! as a function the barotropic flow in coupling between
-                                ! the barotropic and baroclinic flow.  This is only used
-                                ! if SPLIT is true.
+                                ! less than maxCFL_BT_cont to be accommodated.
 NONLINEAR_BT_CONTINUITY = True  !   [Boolean] default = False
                                 ! If true, use nonlinear transports in the barotropic
                                 ! continuity equation.  This does not apply if
                                 ! USE_BT_CONT_TYPE is true.
-RESCALE_BT_FACE_AREAS = True    !   [Boolean] default = False
-                                ! If true, the face areas used by the barotropic solver
-                                ! are rescaled to approximately reflect the open face
-                                ! areas of the interior layers.  This probably requires
-                                ! FLUX_BT_COUPLING to work, and should not be used with
-                                ! USE_BT_CONT_TYPE.
-BT_THICK_SCHEME = "HYBRID"      ! default = "FROM_BT_CONT"
-                                ! A string describing the scheme that is used to set the
-                                ! open face areas used for barotropic transport and the
-                                ! relative weights of the accelerations. Valid values are:
-                                !    ARITHMETIC - arithmetic mean layer thicknesses
-                                !    HARMONIC - harmonic mean layer thicknesses
-                                !    HYBRID (the default) - use arithmetic means for
-                                !       layers above the shallowest bottom, the harmonic
-                                !       mean for layers below, and a weighted average for
-                                !       layers that straddle that depth
-                                !    FROM_BT_CONT - use the average thicknesses kept
-                                !       in the h_u and h_v fields of the BT_cont_type
-BT_STRONG_DRAG = False          !   [Boolean] default = True
-                                ! If true, use a stronger estimate of the retarding
-                                ! effects of strong bottom drag, by making it implicit
-                                ! with the barotropic time-step instead of implicit with
-                                ! the baroclinic time-step and dividing by the number of
-                                ! barotropic steps.
 DT_BT_FILTER = 0.0              !   [sec or nondim] default = -0.25
                                 ! A time-scale over which the barotropic mode solutions
                                 ! are filtered, in seconds if positive, or as a fraction
@@ -599,7 +550,7 @@ VAR_PEN_SW = True               !   [Boolean] default = False
                                 ! If true, use one of the CHL_A schemes specified by
                                 ! OPACITY_SCHEME to determine the e-folding depth of
                                 ! incoming short wave radiation.
-CHL_FILE = "/seawifs_1998-2006_GOLD_smoothed_2X.nc" !
+CHL_FILE = "seawifs_1998-2006_GOLD_smoothed_2X.nc" !
                                 ! CHL_FILE is the file containing chl_a concentrations in
                                 ! the variable CHL_A. It is used when VAR_PEN_SW and
                                 ! CHL_FROM_FILE are true.