update atmos_cubed_sphere

[binli2337]

Description

Update fv3 dynamical core to include changes for mixed-mode applications.

Issue(s) addressed

• fixes Use FV3 dynamical core component to include changes related to mixed-mode FMS #571

Testing

How were these changes tested? The changes were tested in ufs-weather-model.
What compilers / HPCs was it tested with? Intel/Gaea
Are the changes covered by regression tests? (If not, why? Do new tests need to be added?) Yes.
Have the ufs-weather-model regression test been run? On what platform? Yes, on Gaea.

• Will the code updates change regression test baseline? If yes, why? Please show the baseline directory below.
  A new test is added.
• Please commit the regression test log files in your ufs-weather-model branch

Dependencies

If testing this branch requires non-default branches in other repositories, list them.
Those branches should have matching names (ideally)

Do PRs in upstream repositories need to be merged first?
If so add the "waiting for other repos" label and list the upstream PRs

• waiting on Code changes related to EMC FMS mixedmode NOAA-GFDL/GFDL_atmos_cubed_sphere#163

[jkbk2004]

@binli2337 the cubed sphere pr was merged. we can work on this pr to merge.