Bring in some HAFSv2 related UFSATM developments

[BinLiu-NOAA]

Description

This PR combines the following HAFS related developments and bring them back to UFSATM and related ufs-weather-model submodules.

• NoahMP LSM and sea ice related updates for HAFS moving nesting from @RongqianYang-NOAA, @barlage, and @wramstrom. Meanwhile, lots of contribution (discussions/diagnostics/debugging/testing) from @ChuankaiWang-NOAA, @yonghuiweng, ZhanZhang-NOAA, @helin.wei@noaa.gov, @fanglin.yang@noaa.gov, @BinLiu-NOAA as well.
  • Add snow layer and snow soil layer thickness to GFS_type.
  • Add checks for soil moisture for Noah MP.
  • Changes for distinguishing between new and old points for snow-related fields reset in moving nest physics.
  • Add leading_edge logical array to indicate which nest points have been interpolated. Needed for NOAH MP moving nest upgrades.
  • NOAHMP moving nest sea ice and cryosphere fixes and added variables tiice, tisfc, sncovr, fice, hice.
• HAFS moving-nesting related 3D-IAU capability. (from @XuLu-NOAA)
• Enable RRTMGP working with nesting (moving-nesting) configurations. (from @Qingfu-Liu, @dustinswales)
• Introduce two Thompson MP related namelist options of fs_fac_rain and fs_fac_snow for adjustments of max terminal fall speeds of rain and snow. (from @WeiguoWang-NOAA)
• Introduce two namelist options of cat_adj_deep and cat_adj_shal to adjust convective adjustment time in SASAS convection scheme. (from @JunghoonShin-NOAA)
• Update HAFS moving-nesting internal tracker to output moving nest domain location to support the moving-nesting forecast restart capability. (from @BinLiu-NOAA)

Issue(s) addressed

Link the issues to be closed with this PR, whether in this repository, or in another repository.
(Remember, issues should always be created before starting work on a PR branch!)

• related to Update moving_nest/fv_tracker.F90 to output moving nest location in partial atcfunix file #986
• related to HAFS moving nesting related NoahMP LSM and sea ice updates #1046
• related to Introduce two Thompson MP related namelist options of adjustments of max terminal fall speeds under TC conditions ufs-community/ccpp-physics#333
• related to Enable RRTMGP working with nesting (moving-nesting) configurations ufs-community/ccpp-physics#331
• related to Add the 3DIAU capability for regional HAFS NOAA-GFDL/GFDL_atmos_cubed_sphere#398
• related to Bring in HAFSv2 related updates ufs-community/ufs-weather-model#3010

Testing

How were these changes tested?
What compilers / HPCs was it tested with?
Are the changes covered by regression tests? (If not, why? Do new tests need to be added?)
Have the ufs-weather-model regression test been run? On what platform?

• Will the code updates change regression test baseline? If yes, why? Please show the baseline directory below.
• Please commit the regression test log files in your ufs-weather-model branch

Technical and retrospective/real-time-parallel testing were conducted with the UFS-HAFS hurricane application.

Dependencies

If testing this branch requires non-default branches in other repositories, list them.
Those branches should have matching names (ideally)

Do PRs in upstream repositories need to be merged first?
If so add the "waiting for other repos" label and list the upstream PRs

• waiting Introduce Thompson MP namelist options to adjust rain and snow max terminal fall speeds; Enable RRTMGP working with nesting; Introduce SASAS namelist options to control convective adjustment time ufs-community/ccpp-physics#332
• waiting Add the 3DIAU capability for regional HAFS NOAA-GFDL/GFDL_atmos_cubed_sphere#399
• related to Bring in some HAFSv2 related developments and updates ufs-community/ufs-weather-model#3014

[gspetro-NOAA]

Could we get reviews on this PR so that we can process WM parent PR 3014?

[DusanJovic-NOAA]

@BinLiu-NOAA Please suggest reviewers for this PR

[BinLiu-NOAA]

@DusanJovic-NOAA, please consider inviting @wramstrom, @barlage, @dustinswales, @Qingfu-Liu as additional reviewers, as you see fit. Thanks!

[gspetro-NOAA]

@BinLiu-NOAA We may skip to WM PR 3014 today if we can get the reviews for this PR. There seems to be a unit test issue with the PR we were originally going to process.

@wramstrom, @barlage, @dustinswales, @Qingfu-Liu We would like to schedule the WM HAFS update PR ASAP. Is one (or more) of you available to review this PR today or tomorrow?

[dustinswales]

This looks good to me, just some small changes requested.

[gspetro-NOAA]

@dustinswales Are there further changes required for this PR, or are you ready to approve?

[dustinswales]

@BinLiu-NOAA Thanks for making the metadata changes!

[grantfirl]

ufs-community/ccpp-physics#332 was merged.

[gspetro-NOAA]

@BinLiu-NOAA Please revert .gitmodules and update the hashes for CCPP (525174d) and atmos_cubed_sphere (3e5db37).

[BinLiu-NOAA]

@gspetro-NOAA Submodules updated accordingly. Thanks!

[gspetro-NOAA]

@DusanJovic-NOAA @BrianCurtis-NOAA This PR should be ready to merge as soon as we can get one more review. Now that Dustin has reviewed, is one of you willing to look it over?