Adds stubs for marine obs bufr converter job

jobs/JOBSFORGE_GLOBAL_MARINE_BUFR_DUMP

@@ -0,0 +1,45 @@
+#! /usr/bin/env bash
+
+source "${HOMEobsforge}/ush/preamble.sh"
+source "${HOMEobsforge}/ush/jjob_header.sh"
+
+##############################################
+# Set variables used in the script
+##############################################
+
+
+##############################################
+# Begin JOB SPECIFIC work
+##############################################
+
+###############################################################
+# Run relevant script
+
+EXSCRIPT=${DUMPMARINEPY:-${HOMEobsforge}/scripts/exobsforge_global_marine_bufr_dump.py}
+${EXSCRIPT}
+status=$?
+if [[ ${status} -ne 0 ]]; then
+    exit "${status}"
+fi
+
+
+##############################################
+# End JOB SPECIFIC work
+##############################################
+
+##############################################
+# Final processing
+##############################################
+if [[ -e "${pgmout}" ]] ; then
+  cat "${pgmout}"
+fi
+
+##########################################
+# Remove the Temporary working directory
+##########################################
+cd "${DATAROOT}" || exit
+if [[ "${KEEPDATA}" == "NO" ]]; then
+    rm -rf "${DATA}"
+fi
+
+exit 0

jobs/rocoto/marinebufrdump.sh

@@ -0,0 +1,20 @@
+#! /usr/bin/env bash
+
+source "${HOMEobsforge}/ush/preamble.sh"
+
+###############################################################
+# Source UFSDA workflow modules
+. "${HOMEobsforge}/ush/load_obsforge_modules.sh"
+status=$?
+if [[ ${status} -ne 0 ]]; then
+    exit "${status}"
+fi
+
+export job="marinebufrdump"
+export jobid="${job}.$$"
+
+###############################################################
+# Execute the JJOB
+"${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_MARINE_BUFR_DUMP"
+status=$?
+exit "${status}"

parm/config.hera.yaml

@@ -90,3 +90,10 @@ marinedump:
   WALLTIME_MARINE_DUMP: '00:10:00'
   TASK_GEOM_MARINE_DUMP: '1:ppn=20:tpp=2'
   MEMORY_MARINE_DUMP: 32GB
+
+marinebufrdump:
+
+  WALLTIME_MARINE_BUFR_DUMP: '00:10:00'
+  TASK_GEOM_MARINE_BUFR_DUMP: '1:ppn=20:tpp=2'
+  MEMORY_MARINE_BUFR_DUMP: 32GB
+

parm/obsforge_rocoto_template.xml.j2

@@ -136,5 +136,44 @@
 	-->
 
 </task>
+<!--
+	============================================
+	Task: gfs_marine_bufr_dump
+	============================================
+-->
+<task name="gfs_marine_bufr_dump" cycledefs="gfs" maxtries="&MAXTRIES;">
+
+	<command>{{ HOMEobsforge }}/jobs/rocoto/marinebufrdump.sh</command>
+
+	<jobname><cyclestr>obsforge_gfs_marine_bufr_dump_@H</cyclestr></jobname>
+	<account>{{ ACCOUNT }}</account>
+	<queue>{{ QUEUE }}</queue>
+	<partition>{{ PARTITION }}</partition>
+	<walltime>{{ WALLTIME_MARINE_BUFR_DUMP }}</walltime>
+	<nodes>{{ TASK_GEOM_MARINE_BUFR_DUMP }}</nodes>
+	<memory>{{ MEMORY_MARINE_BUFR_DUMP }}</memory>
+	<native>--export=NONE</native>
+
+	<join><cyclestr>{{ COMROOT }}/{{ PSLOT }}/logs/@Y@m@d@H/gfs_marine_bufr_dump_prep.log</cyclestr></join>
+
+	<envar><name>RUN_ENVIR</name><value>emc</value></envar>
+	<envar><name>HOMEobsforge</name><value>{{ HOMEobsforge }}</value></envar>
+	<envar><name>NET</name><value>gfs</value></envar>
+	<envar><name>RUN</name><value>gfs</value></envar>
+	<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
+	<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
+	<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
+	<envar><name>KEEPDATA</name><value>{{ KEEPDATA }}</value></envar>
+	<envar><name>COMROOT</name><value>{{ COMROOT }}</value></envar>
+	<envar><name>DCOMROOT</name><value>{{ DCOMROOT }}</value></envar>
+	<envar><name>DATAROOT</name><value>{{ DATAROOT }}/{{ PSLOT }}/gfs.<cyclestr>@Y@m@d@H</cyclestr></value></envar>
+
+	<!--<dependency>
+		<datadep><cyclestr>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/obsforge/gfs.@Y@m@d/@H/atmos/gfs.t@Hz.updated.status.tm00.bufr_d</cyclestr></datadep>
+	</dependency>
+	-->
+
+</task>
+
 
 </workflow>

scripts/exobsforge_global_marine_bufr_dump.py

@@ -0,0 +1,35 @@
+#!/usr/bin/env python3
+# exobsforge_global_marine_bufr_dump.py
+# This script will collect and preprocess
+# the ocean and seaice observations for
+# global marine assimilation
+import os
+
+from wxflow import AttrDict, Logger, cast_strdict_as_dtypedict, parse_j2yaml
+from pyobsforge.task.marine_bufr_prepobs import MarineBufrObsPrep
+
+# Initialize root logger
+logger = Logger(level='DEBUG', colored_log=True)
+
+
+if __name__ == '__main__':
+
+    # Take configuration from environment and cast it as python dictionary
+    config_env = cast_strdict_as_dtypedict(os.environ)
+
+    # Take configuration from YAML file to augment/append config dict
+    config_yaml = parse_j2yaml(os.path.join(config_env['HOMEobsforge'], 'parm', 'config.yaml'), config_env)
+    # Extract obsforge specific configuration
+    obsforge_dict = {}
+    for key, value in config_yaml['obsforge'].items():
+        if key not in config_env.keys():
+            obsforge_dict[key] = value
+
+    # Combine configs together
+    config = AttrDict(**config_env, **obsforge_dict)
+    config = AttrDict(**config, **config_yaml['marinebufrdump'])
+
+    marineBufrObs = MarineBufrObsPrep(config)
+    marineBufrObs.initialize()
+    marineBufrObs.execute()
+    marineBufrObs.finalize()

ush/python/pyobsforge/task/marine_bufr_prepobs.py

@@ -0,0 +1,47 @@
+#!/usr/bin/env python3
+
+from logging import getLogger
+from typing import Dict, Any
+from wxflow import AttrDict, Task, add_to_datetime, to_timedelta, logit
+
+logger = getLogger(__name__.split('.')[-1])
+
+
+class MarineBufrObsPrep(Task):
+    """
+    Class for preparing and managing marine observations
+    """
+    def __init__(self, config: Dict[str, Any]) -> None:
+        super().__init__(config)
+
+        _window_begin = add_to_datetime(self.task_config.current_cycle, -to_timedelta(f"{self.task_config['assim_freq']}H") / 2)
+        _window_end = add_to_datetime(self.task_config.current_cycle, +to_timedelta(f"{self.task_config['assim_freq']}H") / 2)
+
+        local_dict = AttrDict(
+            {
+                'window_begin': _window_begin,
+                'window_end': _window_end,
+                'PREFIX': f"{self.task_config.RUN}.t{self.task_config.cyc:02d}z.",
+            }
+        )
+
+        # task_config is everything that this task should need
+        self.task_config = AttrDict(**self.task_config, **local_dict)
+
+    @logit(logger)
+    def initialize(self) -> None:
+        """
+        """
+        logger.info("running init")
+
+    @logit(logger)
+    def execute(self) -> None:
+        """
+        """
+        logger.info("running execute")
+
+    @logit(logger)
+    def finalize(self) -> None:
+        """
+        """
+        logger.info("running finalize")