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Merged
CoryMartin-NOAA merged 13 commits into from
May 16, 2025
Merged

Changes for starting to work on WCOSS #65

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3eaf393
start to make things work on wcoss2
Apr 29, 2025
4cda1d9
j02 not n20
Apr 29, 2025
7fa2a79
push changes
Apr 30, 2025
7f59207
reduce modules
May 7, 2025
f6ec8ab
commit a real-time xml template
May 14, 2025
695c507
Try to speed up on WCOSS
CoryMartin-NOAA May 15, 2025
7efdfd3
See if copilot can code without guardrails
CoryMartin-NOAA May 15, 2025
3f3cbc7
Merge branch 'main' into feature/aod-wcoss
May 15, 2025
02800ed
More copilot changes
CoryMartin-NOAA May 15, 2025
f8da91a
change config
CoryMartin-NOAA May 15, 2025
221ab8f
Fix coding norms
CoryMartin-NOAA May 15, 2025
ca68430
try to fix rads
CoryMartin-NOAA May 15, 2025
060933b
address iliana's comments
CoryMartin-NOAA May 16, 2025
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56 changes: 28 additions & 28 deletions modulefiles/obsforge/wcoss2.intel.lua
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Expand Up @@ -15,20 +15,20 @@ load("stack-python/3.10.13")
load("craype/2.7.17")
load("cray-pals/1.3.2")
load("cmake/3.23.1")
load("gettext/0.19.7")
load("pcre2/10.42")
load("curl/8.4.0")
--load("gettext/0.19.7")
--load("pcre2/10.42")
--load("curl/8.4.0")
load("zlib/1.2.13")
load("git/2.35.3")
load("git-lfs/2.11.0")
load("pkg-config/0.29.2")
--load("git/2.35.3")
--load("git-lfs/2.11.0")
--load("pkg-config/0.29.2")
load("hdf5/1.14.0")
load("parallel-netcdf/1.12.2")
load("netcdf-c/4.9.2")
load("nccmp/1.9.0.1")
load("netcdf-fortran/4.6.1")
load("nco/5.0.6")
load("parallelio/2.5.10")
--load("nco/5.0.6")
--load("parallelio/2.5.10")
load("boost/1.83.0")
load("bufr/12.0.1")
load("ecbuild/3.7.2")
Expand All @@ -38,43 +38,43 @@ load("openblas/0.3.24")
load("eckit/1.24.5")
load("fftw/3.3.10")
load("fckit/0.11.0")
load("fms/2023.04")
load("esmf/8.5.0")
--load("fms/2023.04")
--load("esmf/8.5.0")
load("atlas/0.35.0")
load("sp/2.5.0")
--load("sp/2.5.0")
load("gsl-lite/0.37.0")
load("libjpeg/2.1.0")
load("libpng/1.6.37")
load("libxt/1.1.5")
load("libxmu/1.1.4")
load("libxpm/3.5.12")
load("libxaw/1.0.13")
--load("libxt/1.1.5")
--load("libxmu/1.1.4")
--load("libxpm/3.5.12")
--load("libxaw/1.0.13")
load("udunits/2.2.28")
load("ncview/2.1.9")
--load("ncview/2.1.9")
load("netcdf-cxx4/4.3.1")
load("core/rocoto/1.3.5")
load("prod_util/2.0.14")
--load("core/rocoto/1.3.5")
--load("prod_util/2.0.14")

load("py-setuptools/63.4.3")
load("py-jinja2/3.1.2")
load("py-netcdf4/1.5.8")
load("py-pybind11/2.11.1")
load("py-pycodestyle/2.11.0")
load("py-pyyaml/5.4.1")
load("py-scipy/1.10.1")
load("py-xarray/2023.7.0")
load("py-f90nml/1.4.3")
load("py-pip/23.1.2")
load("py-bottleneck/1.3.7")
load("py-numexpr/2.8.4")
load("py-six/1.16.0")
--load("py-scipy/1.10.1")
--load("py-xarray/2023.7.0")
--load("py-f90nml/1.4.3")
--load("py-pip/23.1.2")
--load("py-bottleneck/1.3.7")
--load("py-numexpr/2.8.4")
--load("py-six/1.16.0")
load("py-python-dateutil/2.8.2")
load("py-pytz/2023.3")
load("py-pandas/1.5.3")
--load("py-pandas/1.5.3")
load("py-numpy/1.24.4")
load("py-markupsafe/2.1.3")
--load("py-markupsafe/2.1.3")
load("py-cftime/1.0.3.4")
load("py-packaging/23.1")
--load("py-packaging/23.1")

setenv("CC","cc")
setenv("CXX","CC")
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2 changes: 1 addition & 1 deletion parm/config.hera.yaml
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Expand Up @@ -15,7 +15,7 @@ obsforge:

aoddump:
provider: VIIRSAOD
platforms: ['npp', 'n20', 'n21']
platforms: ['npp', 'n20', 'n21'] # note j01==n20
thinning_threshold: 0
channel: 4
preqc: 2
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2 changes: 1 addition & 1 deletion parm/config.hercules.yaml
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Expand Up @@ -15,7 +15,7 @@ obsforge:

aoddump:
provider: VIIRSAOD
platforms: ['npp', 'n20', 'n21']
platforms: ['npp', 'n20', 'n21'] # note j01==n20
thinning_threshold: 0
channel: 4
preqc: 2
Expand Down
2 changes: 1 addition & 1 deletion parm/config.orion.yaml
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Expand Up @@ -15,7 +15,7 @@ obsforge:

aoddump:
provider: VIIRSAOD
platforms: ['npp', 'n20', 'n21']
platforms: ['npp', 'j01', 'n21'] # note j01==n20
thinning_threshold: 0
channel: 4
preqc: 2
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90 changes: 90 additions & 0 deletions parm/config.wcoss2.yaml
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@@ -0,0 +1,90 @@
obsforge:
PSLOT: obsforge
HOMEobsforge: /lfs/h2/emc/da/noscrub/cory.r.martin/obsforge/obsforge/
SDATE: 202504250000
EDATE: 202506250000
COMROOT: /lfs/h2/emc/ptmp/cory.r.martin/obsforge
DCOMROOT: /lfs/h1/ops/prod/dcom/
DATAROOT: /lfs/h2/emc/stmp/cory.r.martin/RUNDIRS
SCHEDULER: pbspro
ACCOUNT: GFS-DEV
QUEUE: dev
PARTITION: dev
KEEPDATA: YES
assim_freq: 6

aoddump:
provider: VIIRSAOD
platforms: ['npp', 'j01', 'n21'] # note j01==n20
thinning_threshold: 0
channel: 4
preqc: 2
WALLTIME_AOD_DUMP: '00:10:00'
TASK_GEOM_AOD_DUMP: '1:ppn=1:tpp=1'
MEMORY_AOD_DUMP: 96GB

marinedump:
providers:
ghrsst:
list:
- sst_viirs_n21_l3u
- sst_viirs_n20_l3u
- sst_viirs_npp_l3u
- sst_avhrrf_ma_l3u
- sst_avhrrf_mb_l3u
- sst_avhrrf_mc_l3u
- sst_ahi_h08_l3c
- sst_abi_g17_l3c
- sst_abi_g16_l3c
qc config:
min: -2.0
max: 45.0
stride: 15
min number of obs: 10
rads:
list:
- rads_adt_3a
- rads_adt_3b
- rads_adt_6a
- rads_adt_c2
- rads_adt_j2
- rads_adt_j3
- rads_adt_sa
- rads_adt_sw
qc config:
min: -2.0
max: 3.0
error ratio: 1.0
nesdis_amsr2:
list:
- icec_amsr2_north
- icec_amsr2_south
qc config:
min: 0.0
max: 1.0
nesdis_mirs:
list:
- icec_amsu_ma1_l2
- icec_atms_n20_l2
- icec_atms_n21_l2
- icec_atms_npp_l2
# - icec_gmi_gpm_l2
qc config:
min: 0.0
max: 1.0
smap:
list:
- sss_smap_l2
qc config:
min: 0.1
max: 40.0
smos:
list:
- sss_smos_l2
qc config:
min: 0.1
max: 40.0

WALLTIME_MARINE_DUMP: '00:10:00'
TASK_GEOM_MARINE_DUMP: '1:ppn=20:tpp=2'
MEMORY_MARINE_DUMP: 32GB
2 changes: 1 addition & 1 deletion parm/config.yaml
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@@ -1 +1 @@
config.hercules.yaml
config.wcoss2.yaml
137 changes: 137 additions & 0 deletions parm/obsforge_rocoto_template_pbspro.xml.j2
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@@ -0,0 +1,137 @@
<?xml version="1.0"?>
<!DOCTYPE workflow
[
<!--
PROGRAM
Main workflow manager for ObsForge

-->
<!ENTITY PSLOT "{{ PSLOT }}">
<!ENTITY ROTDIR "{{ COMROOT }}/{{ PSLOT }}">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/jobs/rocoto">
<!ENTITY MAXTRIES "2">
]>

<workflow realtime="F" scheduler="{{ SCHEDULER }}" cyclethrottle="1" taskthrottle="25">

<log verbosity="10"><cyclestr>{{ COMROOT }}/{{ PSLOT }}/logs/@Y@m@d@H.log</cyclestr></log>

<!-- Define the cycles -->
<cycledef group="gdas">{{ SDATE }} {{ EDATE }} 06:00:00</cycledef>
<cycledef group="gfs">{{ SDATE }} {{ EDATE }} 06:00:00</cycledef>

<!--
============================================
Task: gfs_aod_dump
============================================
-->
<task name="gfs_aod_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gfs_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
<queue>{{ QUEUE }}</queue>
<walltime>{{ WALLTIME_AOD_DUMP }}</walltime>
<nodes>{{ TASK_GEOM_AOD_DUMP }}</nodes>
<memory>{{ MEMORY_AOD_DUMP }}</memory>
<native>-l place=vscatter:shared</native>

<join><cyclestr>{{ COMROOT }}/{{ PSLOT }}/logs/@Y@m@d@H/gfs_aod_dump_prep.log</cyclestr></join>

<envar><name>RUN_ENVIR</name><value>emc</value></envar>
<envar><name>HOMEobsforge</name><value>{{ HOMEobsforge }}</value></envar>
<envar><name>NET</name><value>gfs</value></envar>
<envar><name>RUN</name><value>gfs</value></envar>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>KEEPDATA</name><value>{{ KEEPDATA }}</value></envar>
<envar><name>COMROOT</name><value>{{ COMROOT }}</value></envar>
<envar><name>DCOMROOT</name><value>{{ DCOMROOT }}</value></envar>
<envar><name>DATAROOT</name><value>{{ DATAROOT }}/{{ PSLOT }}/gfs.<cyclestr>@Y@m@d@H</cyclestr></value></envar>

<!--<dependency>
<datadep><cyclestr>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/obsforge/gfs.@Y@m@d/@H/atmos/gfs.t@Hz.updated.status.tm00.bufr_d</cyclestr></datadep>
</dependency>
-->

</task>

<!--
============================================
Task: gdas_aod_dump
============================================
-->
<task name="gdas_aod_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gdas_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
<queue>{{ QUEUE }}</queue>
<walltime>{{ WALLTIME_AOD_DUMP }}</walltime>
<nodes>{{ TASK_GEOM_AOD_DUMP }}</nodes>
<memory>{{ MEMORY_AOD_DUMP }}</memory>
<native>-l place=vscatter:shared</native>

<join><cyclestr>{{ COMROOT }}/{{ PSLOT }}/logs/@Y@m@d@H/gdas_aod_dump_prep.log</cyclestr></join>

<envar><name>RUN_ENVIR</name><value>emc</value></envar>
<envar><name>HOMEobsforge</name><value>{{ HOMEobsforge }}</value></envar>
<envar><name>NET</name><value>gfs</value></envar>
<envar><name>RUN</name><value>gdas</value></envar>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>KEEPDATA</name><value>{{ KEEPDATA }}</value></envar>
<envar><name>COMROOT</name><value>{{ COMROOT }}</value></envar>
<envar><name>DCOMROOT</name><value>{{ DCOMROOT }}</value></envar>
<envar><name>DATAROOT</name><value>{{ DATAROOT }}/{{ PSLOT }}/gdas.<cyclestr>@Y@m@d@H</cyclestr></value></envar>

<!--<dependency>
<datadep><cyclestr>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/obsforge/gdas.@Y@m@d/@H/atmos/gdas.t@Hz.updated.status.tm00.bufr_d</cyclestr></datadep>
</dependency>
-->

</task>

<!--
============================================
Task: gfs_marine_dump
============================================
-->
<task name="gfs_marine_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinedump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
<queue>{{ QUEUE }}</queue>
<walltime>{{ WALLTIME_MARINE_DUMP }}</walltime>
<nodes>{{ TASK_GEOM_MARINE_DUMP }}</nodes>
<memory>{{ MEMORY_MARINE_DUMP }}</memory>
<native>-l place=vscatter:shared</native>

<join><cyclestr>{{ COMROOT }}/{{ PSLOT }}/logs/@Y@m@d@H/gfs_marine_dump_prep.log</cyclestr></join>

<envar><name>RUN_ENVIR</name><value>emc</value></envar>
<envar><name>HOMEobsforge</name><value>{{ HOMEobsforge }}</value></envar>
<envar><name>NET</name><value>gfs</value></envar>
<envar><name>RUN</name><value>gfs</value></envar>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>KEEPDATA</name><value>{{ KEEPDATA }}</value></envar>
<envar><name>COMROOT</name><value>{{ COMROOT }}</value></envar>
<envar><name>DCOMROOT</name><value>{{ DCOMROOT }}</value></envar>
<envar><name>DATAROOT</name><value>{{ DATAROOT }}/{{ PSLOT }}/gfs.<cyclestr>@Y@m@d@H</cyclestr></value></envar>

<!--<dependency>
<datadep><cyclestr>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/obsforge/gfs.@Y@m@d/@H/atmos/gfs.t@Hz.updated.status.tm00.bufr_d</cyclestr></datadep>
</dependency>
-->

</task>

</workflow>
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