Feature/addb2i - added bufr to ioda converters (from GDASAPP) and testing

[givelberg]

This was tested on orion and hera.
TODO: testing on wcoss (when my account problem gets resolved)

Edited by guillaume

• fixes Migrate the observation pre-processing to obsForge GDASApp#1529

[guillaumevernieres]

Thanks @givelberg .
We'll probably need to figure out how to test this inside the GitHub runner at some point, a problem for another day!

[apchoiCMD]

Tested on Hera

[Mindo.Choi@hfe06 obsforge-utils]$ ctest
Test project /scratch1/NCEPDEV/da/Mindo.Choi/obsForge/build/obsforge-utils
      Start  1: test_b2i_bufr2ioda_insitu_profile_argo
 1/21 Test  #1: test_b2i_bufr2ioda_insitu_profile_argo .......   Passed   12.14 sec
      Start  2: test_b2i_bufr2ioda_insitu_profile_bathy
 2/21 Test  #2: test_b2i_bufr2ioda_insitu_profile_bathy ......   Passed    2.46 sec
      Start  3: test_b2i_bufr2ioda_insitu_profile_glider
 3/21 Test  #3: test_b2i_bufr2ioda_insitu_profile_glider .....   Passed    4.33 sec
      Start  4: test_b2i_bufr2ioda_insitu_profile_tesac
 4/21 Test  #4: test_b2i_bufr2ioda_insitu_profile_tesac ......   Passed    7.09 sec
      Start  5: test_b2i_bufr2ioda_insitu_profile_tropical
 5/21 Test  #5: test_b2i_bufr2ioda_insitu_profile_tropical ...   Passed    2.89 sec
      Start  6: test_b2i_bufr2ioda_insitu_profile_xbtctd
 6/21 Test  #6: test_b2i_bufr2ioda_insitu_profile_xbtctd .....   Passed    2.31 sec
      Start  7: test_b2i_bufr2ioda_insitu_surface_drifter
 7/21 Test  #7: test_b2i_bufr2ioda_insitu_surface_drifter ....   Passed    2.49 sec
      Start  8: test_b2i_bufr2ioda_insitu_surface_trkob
 8/21 Test  #8: test_b2i_bufr2ioda_insitu_surface_trkob ......   Passed    2.53 sec
      Start  9: test_obsforge_util_coding_norms
 9/21 Test  #9: test_obsforge_util_coding_norms ..............   Passed    1.73 sec
      Start 10: test_obsforge_util_prepdata
10/21 Test #10: test_obsforge_util_prepdata ..................   Passed    3.34 sec
      Start 11: test_obsforge_util_rads2ioda
11/21 Test #11: test_obsforge_util_rads2ioda .................   Passed    0.37 sec
      Start 12: test_obsforge_util_ghrsst2ioda
12/21 Test #12: test_obsforge_util_ghrsst2ioda ...............   Passed    0.17 sec
      Start 13: test_obsforge_util_rtofstmp
13/21 Test #13: test_obsforge_util_rtofstmp ..................   Passed    0.93 sec
      Start 14: test_obsforge_util_rtofssal
14/21 Test #14: test_obsforge_util_rtofssal ..................   Passed    0.91 sec
      Start 15: test_obsforge_util_smap2ioda
15/21 Test #15: test_obsforge_util_smap2ioda .................   Passed    0.16 sec
      Start 16: test_obsforge_util_smos2ioda
16/21 Test #16: test_obsforge_util_smos2ioda .................   Passed    0.19 sec
      Start 17: test_obsforge_util_viirsaod2ioda
17/21 Test #17: test_obsforge_util_viirsaod2ioda .............   Passed    0.19 sec
      Start 18: test_obsforge_util_icecamsr2ioda
18/21 Test #18: test_obsforge_util_icecamsr2ioda .............   Passed    0.18 sec
      Start 19: test_obsforge_util_icecmirs2ioda
19/21 Test #19: test_obsforge_util_icecmirs2ioda .............   Passed    0.18 sec
      Start 20: test_obsforge_util_icecjpssrr2ioda
20/21 Test #20: test_obsforge_util_icecjpssrr2ioda ...........   Passed    0.15 sec
      Start 21: test_obsforge_util_insituall2ioda
21/21 Test #21: test_obsforge_util_insituall2ioda ............   Passed    0.15 sec

100% tests passed, 0 tests failed out of 21

Label Time Summary:
obsforge-utils    =   8.66 sec*proc (13 tests)
script            =   8.66 sec*proc (13 tests)

Total Test time (real) =  45.00 sec

[ilianagenkova]

Builds and tests ok on WCOSS/Cactus:

[apchoiCMD]

Builds and tests ok on WCOSS/Cactus:

@ilianagenkova you need to git pull and rebuild them again, your build doesn't include @givelberg stuff, please see above on my build.

[givelberg]

Builds and tests ok on WCOSS/Cactus:

@ilianagenkova
since you are building on WCOSS, you are not seeing the b2i tests at all.

b2i tests currently require bufr files to be staged
they are staged in specific locations on orion and hera,

My CMakelists.txt file generates the b2i test only if it can find the staged bufr files.

This is what I wrote in the TODO description of this pr

[ilianagenkova]

OK, I'll step back.