Combine setup_workflows scripts

.gitignore

@@ -5,6 +5,7 @@ __pycache__
 *.[aox]
 *.mod
 *.sw[a-p]
+.idea/
 
 # Ignore folders
 #-------------------

parm/config/config.base.emc.dyn

@@ -159,6 +159,7 @@ export DO_ICE="NO"
 export DO_AERO="NO"
 export CCPP_SUITE="FV3_GFS_v17_p8"
 export WAVE_CDUMP="" # When to include wave suite: gdas, gfs, or both
+export DOBNDPNT_WAVE="NO"
 export cplwav2atm=".false."
 
 case "${APP}" in
@@ -190,7 +191,7 @@ case "${APP}" in
 
     if [[ "$APP" =~ ^S2SW ]]; then
         export DO_WAVE="YES"
-        export WAVE_CDUMP="both"    
+        export WAVE_CDUMP="both"
         export cplwav2atm=".true."
         export confignamevarfornems="${confignamevarfornems}_wave"
     fi

parm/config/config.base.nco.static

@@ -161,7 +161,7 @@ export FHMAX_HF_GFS=120
 export FHOUT_HF_GFS=1
 export ILPOST=1           # gempak output frequency up to F120
 
-# frequency for saving restart files. set to 6,12,24,48 etc 
+# frequency for saving restart files. set to 6,12,24,48 etc
 export restart_interval_gfs=12
 
 # I/O QUILTING, true--use Write Component; false--use GFDL FMS
@@ -209,6 +209,7 @@ export gldas_cyc=00
 # run wave component
 export DO_WAVE=YES
 export WAVE_CDUMP="both"
+export DOBNDPNT_WAVE="YES"
 
 # Microphysics Options: 99-ZhaoCarr, 8-Thompson; 6-WSM6, 10-MG, 11-GFDL
 export imp_physics=8

parm/config/config.fv3

@@ -41,7 +41,7 @@ fi
 # (Standard) Model resolution dependent variables
 case $case_in in
     "C48")
-        export DELTIM=1200
+        export DELTIM=450
         export layout_x=3
         export layout_y=2
         export layout_x_gfs=3

parm/config/config.resources

@@ -184,12 +184,12 @@ elif [ $step = "sfcanl" ]; then
 elif [ $step = "gldas" ]; then
 
     export wtime_gldas="00:10:00"
-    export npe_gldas=96  
-    export nth_gldas=1 
+    export npe_gldas=96
+    export nth_gldas=1
     export npe_node_gldas=$npe_node_max
-    export npe_gaussian=96  
-    export nth_gaussian=1 
-    export npe_node_gaussian=24           
+    export npe_gaussian=96
+    export nth_gaussian=1
+    export npe_node_gaussian=24
     if [[ "$machine" = "WCOSS_DELL_P3" ]]; then export npe_gldas=112 ; fi
     if [[ "$machine" == "WCOSS_C" ]]; then export memory_gldas="3072M"; fi
 
@@ -360,13 +360,13 @@ elif [ $step = "vrfy" ]; then
     export npe_vrfy_gfs=1
     export npe_node_vrfy_gfs=1
     if [[ "$machine" == "WCOSS_C" ]]; then
-	    export memory_vrfy="3072M"
+      export memory_vrfy="3072M"
     elif [[ "$machine" == "HERA" ]]; then
-	    export memory_vrfy="16384M"
+      export memory_vrfy="16384M"
     fi
 
 elif [ $step = "metp" ]; then
-    
+
     export nth_metp=1
     export wtime_metp="03:00:00"
     export npe_metp=4
@@ -375,9 +375,9 @@ elif [ $step = "metp" ]; then
     export npe_metp_gfs=4
     export npe_node_metp_gfs=4
     if [[ "$machine" == "WCOSS_C" ]]; then
-            export memory_metp="3072M"
+      export memory_metp="3072M"
     elif [[ "$machine" == "THEIA" ]]; then
-            export memory_metp="16384M"
+      export memory_metp="16384M"
     fi
 
 elif [ $step = "echgres" ]; then
@@ -394,9 +394,9 @@ elif [ $step = "init" ]; then
     export nth_init=1
     export npe_node_init=6
     if [ $machine = "WCOSS_DELL_P3" ]; then
-        export memory_init="10G"
+      export memory_init="10G"
     else
-        export memory_init="70G"
+      export memory_init="70G"
     fi
 
 elif [ $step = "init_chem" ]; then
@@ -428,7 +428,7 @@ elif [ $step = "coupled_ic" ]; then
 
 elif [ $step = "eobs" -o $step = "eomg" ]; then
 
-    export wtime_eobs="00:15:00"
+    export wtime_eobs="00:45:00"
     export wtime_eomg="01:00:00"
     if [ $CASE = "C768" ]; then
       export npe_eobs=200
@@ -439,10 +439,16 @@ elif [ $step = "eobs" -o $step = "eomg" ]; then
     elif [ $CASE = "C96" -o $CASE = "C48" ]; then
       export npe_eobs=20
     fi
+    export npe_eomg=$npe_eobs
     export nth_eobs=2
     if [[ "$machine" = "WCOSS_DELL_P3" ]]; then export nth_eobs=7; fi
+    export nth_eomg=$nth_eobs
     export npe_node_eobs=$(echo "$npe_node_max / $nth_eobs" | bc)
-    if [[ "$machine" == "WCOSS_C" ]]; then export memory_eobs="3072M"; fi
+    export npe_node_eomg=$npe_node_eobs
+    if [[ "$machine" == "WCOSS_C" ]]; then
+      export memory_eobs="3072M"
+      export memory_eomg=$memory_eobs
+    fi
 
 elif [ $step = "ediag" ]; then
 

parm/config/config.wave

@@ -30,7 +30,6 @@ export waveGRD=${waveGRD:-'gnh_10m aoc_9km gsh_15m'}
 export waveGRDN=${waveGRDN:-'1 2 3'} # gridnumber for ww3_multi
 export waveGRDG=${waveGRDG:-'10 20 30'} # gridgroup for ww3_multi
 export USE_WAV_RMP=${USE_WAV_RMP:-'YES'} #yes/no rmp grid remapping pre-processed coefficients
-export DOBNDPNT_WAVE=${DOBNDPNT_WAVE:-'YES'}
 export waveMULTIGRID=${waveMULTIGRID:-'.true.'}
 export MESH_WAV=${MESH_WAV:-'mesh.gwes_30m.nc'}
 
@@ -84,20 +83,20 @@ fi
 # Restart timing business
 
 export RSTTYPE_WAV='T'          # generate second tier of restart files
-if [ "${CDUMP}" != gfs ]; then    # Setting is valid for GDAS and GEFS 
+if [ "${CDUMP}" != gfs ]; then    # Setting is valid for GDAS and GEFS
   export DT_1_RST_WAV=10800       # time between restart files, set to DTRST=1 for a single restart file
   export DT_2_RST_WAV=43200       # restart stride for checkpointing restart
   export RSTIOFF_WAV=0            # first restart file offset relative to model start
 else                              # This is a GFS run
   rst_dt_gfs=$(( restart_interval_gfs * 3600 ))
-  if [ $rst_dt_gfs -gt 0 ]; then 
+  if [ $rst_dt_gfs -gt 0 ]; then
     export DT_1_RST_WAV=${rst_dt_gfs:-0}   # time between restart files, set to DTRST=1 for a single restart file
     export DT_2_RST_WAV=${rst_dt_gfs:-0}   # restart stride for checkpointing restart
-  else 
+  else
     rst_dt_fhmax=$(( FHMAX_WAV * 3600 ))
     export DT_1_RST_WAV=0                    # time between restart files, set to DTRST=1 for a single restart file
-    export DT_2_RST_WAV=${rst_dt_fhmax:-0}   # use checkpoint restart file name for creating restart at end of run 
-  fi 
+    export DT_2_RST_WAV=${rst_dt_fhmax:-0}   # use checkpoint restart file name for creating restart at end of run
+  fi
   export RSTIOFF_WAV=0                   # first restart file offset relative to model start
 fi
 #