Remove support for Jet and S4

README.md

@@ -31,8 +31,6 @@ The Global Workflow currently supports the following machines at the indicated t
 | Orion<br>MSU                            | 2    | The GSI runs very slowly on Orion and the TC tracker is not supported.     |
 | Gaea C5/C6<br>RDHPCS                    | 3    | Currently non-operational following an OS upgrade.<br>Supported by EPIC.   |
 | AWS, GCP, Azure <br>NOAA Parallel Works | 3    | Supported by EPIC.                                                         |
-| Jet<br>RDHPCS                           | 3    | Supported by NESDIS.                                                       |
-| S4<br>SSEC                              | 3    | Currently non-operational following an OS upgrade.<br>Supported by NESDIS. |
 
 <ins>**Tier Definitions**</ins>
 

dev/workflow/hosts.py

@@ -15,9 +15,8 @@ class Host:
     Gather Host specific information.
     """
 
-    SUPPORTED_HOSTS = ['HERA', 'ORION', 'JET', 'HERCULES',
-                       'WCOSS2', 'S4', 'CONTAINER', 'GAEAC5',
-                       'GAEAC6', 'AWSPW', 'AZUREPW', 'GOOGLEPW']
+    SUPPORTED_HOSTS = ['HERA', 'ORION', 'HERCULES', 'WCOSS2', 'CONTAINER',
+                       'GAEAC5', 'GAEAC6', 'AWSPW', 'AZUREPW', 'GOOGLEPW']
 
     def __init__(self, host=None):
 
@@ -56,12 +55,8 @@ def detect(cls):
             machine = 'HERA'
         elif os.path.exists('/work/noaa'):
             machine = socket.gethostname().split("-", 1)[0].upper()
-        elif os.path.exists('/lfs5/HFIP'):
-            machine = 'JET'
         elif os.path.exists('/lfs/f1'):
             machine = 'WCOSS2'
-        elif os.path.exists('/data/prod'):
-            machine = 'S4'
         elif os.path.exists('/gpfs/f5'):
             machine = 'GAEAC5'
         elif os.path.exists('/gpfs/f6'):

docs/doxygen/compile

@@ -9,8 +9,6 @@ if [ $machine = "HERA" ]; then
     doxygen=/usr/bin/doxygen
 elif [ $machine = "ORION" ]; then
     doxygen=/bin/doxygen
-elif [ $machine = "JET" ]; then
-    doxygen=/contrib/doxygen/1.8.10/bin/doxygen
 else
     echo "machine $machine is unrecognized!"
     echo "trying system doxygen"

docs/source/components.rst

@@ -60,9 +60,7 @@ Observation data, also known as dump data, is prepared in production and then ar
 
 * Hera: ``/scratch1/NCEPDEV/global/glopara/dump``
 * Orion/Hercules: ``/work/noaa/rstprod/dump``
-* Jet: ``/mnt/lfs5/HFIP/hfv3gfs/glopara/dump``
 * WCOSS2: ``/lfs/h2/emc/global/noscrub/emc.global/dump``
-* S4: ``/data/prod/glopara/dump``
 
 -----------------------------
 Global Dump Archive Structure

docs/source/hpc.rst

@@ -202,34 +202,6 @@ The Global Workflow provides capabilities for deterministic and ensemble forecas
      - 
      - 
      -
-   * - Jet     
-     - 3   
-     - X     
-     - 
-     - 
-     - X   
-     - 
-     - 
-     - X    
-     - 
-     - 
-     - X   
-     - X      
-     - X
-   * - S4      
-     - 3   
-     - 
-     - 
-     -
-     - X   
-     - 
-     - 
-     - X    
-     - 
-     - 
-     - X   
-     - X      
-     -
 
 ================================
 Experiment troubleshooting help
@@ -249,8 +221,6 @@ HPC helpdesks
 * Hercules:  rdhpcs.hercules.help@noaa.gov
 * HPSS: rdhpcs.hpss.help@noaa.gov
 * Gaea: oar.gfdl.help@noaa.gov
-* S4: innocent.souopgui@noaa.gov
-* Jet: rdhpcs.jet.help@noaa.gov
 * Cloud: rdhpcs.cloud.help@noaa.gov
 
 ======================
@@ -259,8 +229,6 @@ Restricted data access
 
 The GFS system ingests dump data files that contain global observation data. A number of these dump files contain restricted data which means those files come with an extra level of permissions called restricted or ‘rstprod’. Users who wish to run cycled GFS experiments, which both utilizes restricted observation data and produces output containing restricted data, will need to gain rstprod group access.
 
-NOTE: Only non-restricted data is available on S4.
-
 To request rstprod access, do either a and/or b below:
 
 a) If you need restricted data access on WCOSS2, read details about restricted data and fill out form here:
@@ -271,15 +239,9 @@ b) If you need restricted data access on RDHPCS systems: go to the AIM system, c
 
 https://aim.rdhpcs.noaa.gov/
 
-====================================
-Optimizing the global workflow on S4
-====================================
-
-The S4 cluster is relatively small and so optimizations are recommended to improve cycled runtimes. Please contact Innocent Souopgui (innocent.souopgui@noaa.gov) if you are planning on running a cycled experiment on this system to obtain optimized configuration files.
-
-==================================================
-Stacksize on R&Ds (Hera, Orion, Hercules, Jet, S4)
-==================================================
+=========================================
+Stacksize on R&Ds (Hera, Orion, Hercules)
+=========================================
 
 Some GFS components, like the UPP, need an unlimited stacksize. Add the following setting into your appropriate .*rc file to support these components:
 

docs/source/init.rst

@@ -111,7 +111,6 @@ Warm-start cycled w/ coupled (S2S) model C48 atmosphere C48 enkf (80 members) 5
    Hera: /scratch1/NCEPDEV/global/glopara/data/ICSDIR/C48C48mx500
    Orion/Hercules: /work/noaa/global/glopara/data/ICSDIR/C48C48mx500
    WCOSS2: /lfs/h2/emc/global/noscrub/emc.global/data/ICSDIR/C48C48mx500
-   Jet: /lfs5/HFIP/hfv3gfs/glopara/data/ICSDIR/C48C48mx500
    AWS: https://noaa-nws-global-pds.s3.amazonaws.com/index.html#data/ICSDIR/C48C48mx500
 
 Start date = 2021032312
@@ -227,8 +226,6 @@ Forecast-only P8 prototype initial conditions are made available to users on sup
     WCOSS2: /lfs/h2/emc/global/noscrub/emc.global/IC/COUPLED
     HERA: /scratch1/NCEPDEV/climate/role.ufscpara/IC
     ORION/Hercules: /work/noaa/global/glopara/data/ICSDIR/prototype_ICs
-    JET: /mnt/lfs5/HFIP/hfv3gfs/glopara/data/ICSDIR/prototype_ICs
-    S4: /data/prod/glopara/coupled_ICs
 
 These locations are known within the workflow via paths set in ``parm/config/config.coupled_ic``.
 
@@ -255,7 +252,7 @@ Not yet supported. See the UFS_UTILS documentation on the gdas_init utility to g
 ---------------------
 Forecast-only coupled
 ---------------------
-Coupled initial conditions are currently only generated offline and copied prior to the forecast run. Prototype initial conditions will automatically be used when setting up an experiment as an S2SW app, there is no need to do anything additional. Sample copies of initial conditions from the prototype runs are currently maintained on Hera, Orion/Hercules, Jet, and WCOSS2. The locations used are determined by ``parm/config/config.stage_ic``.
+Coupled initial conditions are currently only generated offline and copied prior to the forecast run. Prototype initial conditions will automatically be used when setting up an experiment as an S2SW app, there is no need to do anything additional. Sample copies of initial conditions from the prototype runs are currently maintained on Hera, Orion/Hercules, and WCOSS2. The locations used are determined by ``parm/config/config.stage_ic``.
 Note however, that due to the rapid changes in the model configuration, some staged initial conditions may not work.
 
 .. _forecastonly-atmonly:
@@ -314,9 +311,6 @@ For HPSS path, see retrospective table in :ref:`pre-production parallel section
 Manual Generation
 *****************
 
-.. note::
-   Initial conditions cannot be generated on S4. These must be generated on another supported platform then pushed to S4. If you do not have access to a supported system or need assistance, please contact Innocent Souopgui (innocent.souopgui@noaa.gov).
-
 .. _coldstarts:
 
 The following information is for users needing to generate cold-start initial conditions for a cycled experiment that will run at a different resolution or layer amount than the operational GFS (C768C384L127).