Update GSI analysis jobs to use COMIN/COMOUT

jobs/JGDAS_ENKF_SELECT_OBS

@@ -32,21 +32,25 @@ GPREFIX_DET="${GDUMP}.t${gcyc}z."
 export GSUFFIX=".ensmean.nc"
 
 # Generate COM variables from templates
-RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_OBS
-MEMDIR='ensstat' YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_ATMOS_ANALYSIS
-declare -rx COM_ATMOS_ANALYSIS_ENS="${COM_ATMOS_ANALYSIS}"
+RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
+	COMIN_OBS:COM_OBS_TMPL
+MEMDIR='ensstat' YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \ 
+	COMOUT_ATMOS_ANALYSIS:COM_ATMOS_ANALYSIS_TMPL
+declare -rx COMOUT_ATMOS_ANALYSIS_ENS="${COMOUT_ATMOS_ANALYSIS}"
 
-RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -r COM_ATMOS_ANALYSIS_DET:COM_ATMOS_ANALYSIS_TMPL
+RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -r \
+	COMOUT_ATMOS_ANALYSIS_DET:COM_ATMOS_ANALYSIS_TMPL
 
 MEMDIR='ensstat' RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \
-    COM_ATMOS_ANALYSIS_PREV:COM_ATMOS_ANALYSIS_TMPL \
-    COM_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL \
+    COMIN_ATMOS_ANALYSIS_PREV:COM_ATMOS_ANALYSIS_TMPL \
+    COMIN_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL 
 
-RUN="${GDUMP}" YMD=${gPDY} HH=${gcyc} declare_from_tmpl -r COM_ATMOS_ANALYSIS_DET_PREV:COM_ATMOS_ANALYSIS_TMPL
+RUN="${GDUMP}" YMD=${gPDY} HH=${gcyc} declare_from_tmpl -r \
+	COMIN_ATMOS_ANALYSIS_DET_PREV:COM_ATMOS_ANALYSIS_TMPL
 
-mkdir -m 775 -p "${COM_ATMOS_ANALYSIS}"
+mkdir -p "${COMOUT_ATMOS_ANALYSIS}"
 
-export ATMGES_ENSMEAN="${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006${GSUFFIX}"
+export ATMGES_ENSMEAN="${COMIN_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006${GSUFFIX}"
 if [[ ! -f ${ATMGES_ENSMEAN} ]]; then
     echo "FATAL ERROR: FILE MISSING: ATMGES_ENSMEAN = ${ATMGES_ENSMEAN}"
     exit 1
@@ -61,44 +65,44 @@ status=$?
 export LEVS
 
 # Link observational data
-export PREPQC="${COM_OBS}/${OPREFIX}prepbufr"
+export PREPQC="${COMIN_OBS}/${OPREFIX}prepbufr"
 if [[ ! -f ${PREPQC} ]]; then
     echo "WARNING: Global PREPBUFR FILE ${PREPQC} MISSING"
 fi
-export TCVITL="${COM_OBS}/${APREFIX_DET}syndata.tcvitals.tm00"
+export TCVITL="${COMIN_OBS}/${APREFIX_DET}syndata.tcvitals.tm00"
 if [[ ${DONST} = "YES" ]]; then
-   export NSSTBF="${COM_OBS}/${OPREFIX}nsstbufr"
+   export NSSTBF="${COMIN_OBS}/${OPREFIX}nsstbufr"
 fi
-export PREPQCPF="${COM_OBS}/${OPREFIX}prepbufr.acft_profiles"
+export PREPQCPF="${COMIN_OBS}/${OPREFIX}prepbufr.acft_profiles"
 
 # Deterministic analysis and increment files
-export SFCANL="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}sfcanl.nc"
-export DTFANL="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}dtfanl.nc"
-export ATMANL="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atmanl.nc"
-export ATMINC="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atminc.nc"
+export SFCANL="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}sfcanl.nc"
+export DTFANL="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}dtfanl.nc"
+export ATMANL="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atmanl.nc"
+export ATMINC="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atminc.nc"
 
 # Guess Bias correction coefficients related to control
-export GBIAS=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias
-export GBIASPC=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_pc
-export GBIASAIR=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_air
-export GRADSTAT=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}radstat
+export GBIAS=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias
+export GBIASPC=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_pc
+export GBIASAIR=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_air
+export GRADSTAT=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}radstat
 
 # Bias correction coefficients related to ensemble mean
-export ABIAS="${COM_ATMOS_ANALYSIS}/${APREFIX}abias.ensmean"
-export ABIASPC="${COM_ATMOS_ANALYSIS}/${APREFIX}abias_pc.ensmean"
-export ABIASAIR="${COM_ATMOS_ANALYSIS}/${APREFIX}abias_air.ensmean"
-export ABIASe="${COM_ATMOS_ANALYSIS}/${APREFIX}abias_int.ensmean"
+export ABIAS="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias.ensmean"
+export ABIASPC="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_pc.ensmean"
+export ABIASAIR="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_air.ensmean"
+export ABIASe="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_int.ensmean"
 
 # Diagnostics related to ensemble mean
-export GSISTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}gsistat.ensmean"
-export CNVSTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}cnvstat.ensmean"
-export OZNSTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}oznstat.ensmean"
-export RADSTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}radstat.ensmean"
+export GSISTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}gsistat.ensmean"
+export CNVSTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}cnvstat.ensmean"
+export OZNSTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}oznstat.ensmean"
+export RADSTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}radstat.ensmean"
 
 # Select observations based on ensemble mean
 export RUN_SELECT="YES"
 export USE_SELECT="NO"
-export SELECT_OBS="${COM_ATMOS_ANALYSIS}/${APREFIX}obsinput.ensmean"
+export SELECT_OBS="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}obsinput.ensmean"
 
 export DIAG_SUFFIX="_ensmean"