Refactoring of the marine B-matrix job #2749
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,67 @@ | ||
| #!/bin/bash | ||
|
|
||
| source "${HOMEgfs}/ush/preamble.sh" | ||
|
|
||
| export DATA=${DATA:-${DATAROOT}/${RUN}marinebmat_${cyc}} | ||
|
CoryMartin-NOAA marked this conversation as resolved.
Outdated
|
||
| # source config.base, config.ocnanal and config.marinebmat | ||
| # and pass marinebmat to ${machine}.env | ||
| source "${HOMEgfs}/ush/jjob_header.sh" -e "marinebmat" -c "base ocnanal marinebmat" | ||
|
|
||
| # If ensemble perturbations are used, save them in a DATAenspert directory that will | ||
| # exist throughout the DA cycle | ||
| if (( 10#${NMEM_ENS:-0} > 0 )); then | ||
| export DATAjob="${DATAROOT}/${RUN}marinebmat.${PDY:-}${cyc}" | ||
| export DATAenspert="${DATAjob}/enspert" | ||
| if [[ ! -d "${DATAenspert}" ]]; then mkdir -p "${DATAenspert}"; fi | ||
| fi | ||
|
guillaumevernieres marked this conversation as resolved.
Outdated
|
||
|
|
||
| ############################################## | ||
| # Set variables used in the script | ||
| ############################################## | ||
| # shellcheck disable=SC2153 | ||
| GDATE=$(date --utc +%Y%m%d%H -d "${PDY} ${cyc} - ${assim_freq} hours") | ||
| gPDY=${GDATE:0:8} | ||
| gcyc=${GDATE:8:2} | ||
| export GDUMP="gdas" | ||
| export GDUMP_ENS="enkf${GDUMP}" | ||
|
guillaumevernieres marked this conversation as resolved.
|
||
|
|
||
| ############################################## | ||
| # Begin JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| # Generate COM variables from templates | ||
| RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \ | ||
| COMIN_OCEAN_HISTORY_PREV:COM_OCEAN_HISTORY_TMPL \ | ||
| COMIN_ICE_HISTORY_PREV:COM_ICE_HISTORY_TMPL | ||
|
|
||
| RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \ | ||
| COMIN_OCEAN_HISTORY_ENS_PREV:COM_OCEAN_HISTORY_TMPL \ | ||
| COMIN_ICE_HISTORY_ENS_PREV:COM_ICE_HISTORY_TMPL | ||
|
|
||
| YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \ | ||
| COMOUT_OCEAN_BMATRIX:COM_OCEAN_BMATRIX_TMPL \ | ||
| COMOUT_ICE_BMATRIX:COM_ICE_BMATRIX_TMPL | ||
|
|
||
| mkdir -p "${COMOUT_OCEAN_BMATRIX}" | ||
| mkdir -p "${COMOUT_ICE_BMATRIX}" | ||
|
|
||
| ############################################################### | ||
| # Run relevant script | ||
|
|
||
| EXSCRIPT=${GDASMARINEBMATRUNPY:-${SCRgfs}/exglobal_marine_bmat_run.py} | ||
|
Contributor
There was a problem hiding this comment. why
Contributor
Author
There was a problem hiding this comment. ok, will push the changes after I'm done testing |
||
| ${EXSCRIPT} | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
|
|
||
| ############################################## | ||
| # End JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]] ; then | ||
| cat "${pgmout}" | ||
| fi | ||
|
|
||
| exit 0 | ||
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,11 @@ | ||
| #!/bin/bash | ||
|
|
||
| ########## config.marinebmat ########## | ||
| # configuration for the marine B-matrix | ||
|
|
||
| echo "BEGIN: config.marinebmat" | ||
|
|
||
| # Get task specific resources | ||
| . "${EXPDIR}/config.resources" marinebmat | ||
|
|
||
| echo "END: config.marinebmat" |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Does this work?
FIXgfsis not available at the setup level. It is available in the jobs. This should be moved to the config files.There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Just tested again, it does work.
{{ FIXgfs }}/gdas/soca/1440x1080x75/socabecomes${ FIXgfs}/gdas/soca/1440x1080x75/socain the config under exp dir.I want to keep the option exposed in the yaml file, since that fix dir is still fluctuating ...