Refactoring of the marine B-matrix job #2749
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,68 @@ | ||
| #!/bin/bash | ||
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| source "${HOMEgfs}/ush/preamble.sh" | ||
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| export DATA=${DATA:-${DATAROOT}/${RUN}marinebmat_${cyc}} | ||
| # source config.base, config.ocnanal and config.marinebmat | ||
| # and pass marinebmat to ${machine}.env | ||
| source "${HOMEgfs}/ush/jjob_header.sh" -e "marinebmat" -c "base ocnanal marinebmat" | ||
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| # If ensemble perturbations are used, save them in a DATAenspert directory that will | ||
| # exist throughout the DA cycle | ||
| if (( 10#${NMEM_ENS:-0} > 0 )); then | ||
| export DATAjob="${DATAROOT}/${RUN}marinebmat.${PDY:-}${cyc}" | ||
| export DATAenspert="${DATAjob}/enspert" | ||
| if [[ ! -d "${DATAenspert}" ]]; then mkdir -p "${DATAenspert}"; fi | ||
| fi | ||
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| ############################################## | ||
| # Set variables used in the script | ||
| ############################################## | ||
| # shellcheck disable=SC2153 | ||
| GDATE=$(date --utc +%Y%m%d%H -d "${PDY} ${cyc} - ${assim_freq} hours") | ||
| export GDATE | ||
| export gPDY=${GDATE:0:8} | ||
| export gcyc=${GDATE:8:2} | ||
| export GDUMP="gdas" | ||
| export GDUMP_ENS="enkf${GDUMP}" | ||
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| ############################################## | ||
| # Begin JOB SPECIFIC work | ||
| ############################################## | ||
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| # Generate COM variables from templates | ||
| RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \ | ||
| COMIN_OCEAN_HISTORY_PREV:COM_OCEAN_HISTORY_TMPL \ | ||
| COMIN_ICE_HISTORY_PREV:COM_ICE_HISTORY_TMPL | ||
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| RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \ | ||
| COMIN_OCEAN_HISTORY_ENS_PREV:COM_OCEAN_HISTORY_TMPL \ | ||
| COMIN_ICE_HISTORY_ENS_PREV:COM_ICE_HISTORY_TMPL | ||
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| YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \ | ||
| COMOUT_OCEAN_BMATRIX:COM_OCEAN_BMATRIX_TMPL \ | ||
| COMOUT_ICE_BMATRIX:COM_ICE_BMATRIX_TMPL | ||
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| mkdir -p "${COMOUT_OCEAN_BMATRIX}" | ||
| mkdir -p "${COMOUT_ICE_BMATRIX}" | ||
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| ############################################################### | ||
| # Run relevant script | ||
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| EXSCRIPT=${GDASMARINEBMATRUNPY:-${SCRgfs}/exglobal_marine_bmat_run.py} | ||
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Contributor
There was a problem hiding this comment. why
Contributor
Author
There was a problem hiding this comment. ok, will push the changes after I'm done testing |
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| ${EXSCRIPT} | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
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| ############################################## | ||
| # End JOB SPECIFIC work | ||
| ############################################## | ||
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| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]] ; then | ||
| cat "${pgmout}" | ||
| fi | ||
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| exit 0 | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| #! /usr/bin/env bash | ||
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| source "${HOMEgfs}/ush/preamble.sh" | ||
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| ############################################################### | ||
| # Source UFSDA workflow modules | ||
| . "${HOMEgfs}/ush/load_ufsda_modules.sh" | ||
| status=$? | ||
| [[ "${status}" -ne 0 ]] && exit "${status}" | ||
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| export job="marinebmat" | ||
| export jobid="${job}.$$" | ||
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| ############################################################### | ||
| # setup python path for workflow utilities and tasks | ||
| wxflowPATH="${HOMEgfs}/ush/python:${HOMEgfs}/ush/python/wxflow/src" | ||
| socaToolsPATH="${HOMEgfs}/sorc/gdas.cd/ush/soca/tools" | ||
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| PYTHONPATH="${PYTHONPATH:+${PYTHONPATH}:}${wxflowPATH}:${socaToolsPATH}" | ||
| export PYTHONPATH | ||
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| ############################################################### | ||
| # Execute the JJOB | ||
| "${HOMEgfs}"/jobs/JGLOBAL_MARINE_BMAT | ||
| status=$? | ||
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| exit "${status}" | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,11 @@ | ||
| #!/bin/bash | ||
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| ########## config.marinebmat ########## | ||
| # configuration for the marine B-matrix | ||
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| echo "BEGIN: config.marinebmat" | ||
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| # Get task specific resources | ||
| . "${EXPDIR}/config.resources" marinebmat | ||
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| echo "END: config.marinebmat" |
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